CK934457

Overview
NameCK934457
Unique NameCK934457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934457_ssr457 microsatellite CK934457_ssr457:457..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF12_ARATH (Ethylene-responsive transcription factor ERF012 OS=Arabidopsis thaliana GN=ERF012 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 33/60 (55.00%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            K Y+GVR R WG + +EIR PN+K +R+WLG++ TA  AA+AYD A   L+G +A LNFP
Sbjct:   48 KKYKGVRMRSWGSWVSEIRAPNQK-TRIWLGSYSTAEAAARAYDVALLCLKGPQANLNFP 106          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: SHN2_ARATH (Ethylene-responsive transcription factor SHINE 2 OS=Arabidopsis thaliana GN=SHN2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPL 667
            + +RGVR+R WG + +EIR P  K  RVWLGTFETA  AA+AYD AA  + G  A  NFP+
Sbjct:    5 RKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFETAEAAARAYDQAALLMNGQNAKTNFPV 64          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: DRE2C_ARATH (Dehydration-responsive element-binding protein 2C OS=Arabidopsis thaliana GN=DREB2C PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            YRGVR+R WG++ AEIR+P+  G+R+WLGTF ++ EAA AYD AA  + G  A LN P
Sbjct:   72 YRGVRQRRWGKWVAEIREPDG-GARLWLGTFSSSYEAALAYDEAAKAIYGQSARLNLP 128          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: DRE1C_ARATH (Dehydration-responsive element-binding protein 1C OS=Arabidopsis thaliana GN=DREB1C PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  479 EEKH--YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            E +H  YRGVR+R  G++  E+R+PN+K +R+WLGTF+TA  AA+A+D AA  LRG  A LNF
Sbjct:   45 ETRHPIYRGVRQRNSGKWVCELREPNKK-TRIWLGTFQTAEMAARAHDVAAIALRGRSACLNF 106          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: SHN3_ARATH (Ethylene-responsive transcription factor SHINE 3 OS=Arabidopsis thaliana GN=SHN3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPL 667
            K +RGVR+R WG + +EIR P  K  RVWLGTF+TA  AA+AYD AA  + G  A  NFP+
Sbjct:    5 KKFRGVRQRQWGSWVSEIRHPLLK-RRVWLGTFDTAETAARAYDQAAVLMNGQSAKTNFPV 64          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF03_ARATH (Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            ++ +RGVR+R WG + +EIR P  K +R+WLGTFETA +AA+AYD AA  + G +A  NFP
Sbjct:    5 QQRFRGVRQRHWGSWVSEIRHPLLK-TRIWLGTFETAEDAARAYDEAARLMCGPRARTNFP 64          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: DRE2H_ARATH (Putative dehydration-responsive element-binding protein 2H OS=Arabidopsis thaliana GN=DREB2H PE=5 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPL 667
            Y GVR+R WG++ AEIR+P R G+++WLGTF ++ EAA AYD A+  + G  A LN PL
Sbjct:   67 YTGVRQRTWGKWVAEIREPGR-GAKLWLGTFSSSYEAALAYDEASKAIYGQSARLNLPL 124          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: DRE1D_ARATH (Dehydration-responsive element-binding protein 1D OS=Arabidopsis thaliana GN=DREB1D PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  479 EEKH--YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            E +H  YRGVR+R  G++  E+R+PN+K SR+WLGTF T   AA+A+D AA  LRG  A LNF
Sbjct:   48 ETRHPIYRGVRQRNSGKWVCEVREPNKK-SRIWLGTFPTVEMAARAHDVAALALRGRSACLNF 109          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF17_ARATH (Ethylene-responsive transcription factor ERF017 OS=Arabidopsis thaliana GN=ERF017 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            +  Y+GVR+R WG++ +EIR PN +  R+WLG+++T  +AA+A+D A + LRG+ A  NFP
Sbjct:    9 QSKYKGVRKRKWGKWVSEIRLPNSR-ERIWLGSYDTPEKAARAFDAALYCLRGNNAKFNFP 68          
The following BLAST results are available for this feature:
BLAST of CK934457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF12_ARATH1.631e-1155.00Ethylene-responsive transcription factor ERF012 OS... [more]
SHN2_ARATH2.130e-1155.74Ethylene-responsive transcription factor SHINE 2 O... [more]
DRE2C_ARATH2.130e-1156.90Dehydration-responsive element-binding protein 2C ... [more]
DRE1C_ARATH2.130e-1155.56Dehydration-responsive element-binding protein 1C ... [more]
SHN3_ARATH2.782e-1155.74Ethylene-responsive transcription factor SHINE 3 O... [more]
ERF03_ARATH2.782e-1154.10Ethylene-responsive transcription factor ERF003 OS... [more]
DRE2H_ARATH2.782e-1154.24Putative dehydration-responsive element-binding pr... [more]
DRE1D_ARATH4.745e-1155.56Dehydration-responsive element-binding protein 1D ... [more]
ERF17_ARATH8.094e-1147.54Ethylene-responsive transcription factor ERF017 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934457 ID=CK934457; Name=CK934457; organism=Citrus sinensis; type=EST; length=685bp
GGGGAAAATACACCAAACCAATTTCCATTTACATTTCATCTCATCTTCAA
TACCAACTGTAGCTTTTCTTTTAAATATGGCATCTCTGAATGAAGCATCA
ACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTTACTTC
TTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCTCAAA
GCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAACAGTT
ACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTTCAAG
CACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATACCCC
AAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGATGCT
GATAACCCAGTTGCTGTGAAAAATAAAGATCCAGATGCTGCTGCTGATAA
TAATACTAATAATAATAATAAAAATAATGAGGAAAAGCATTACAGAGGAG
TAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCCGAAT
AGAAAAGGGAGCCGGGTTTGGCTTGGGACTTTTGAAACTGCCGTGGAAGC
CGCCAAAGCTTATGACAACGCTGCGTTTAGGCTGCGTGGAAGCAAAGCGA
TATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTG
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