CK934457

Overview
NameCK934457
Unique NameCK934457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934457_ssr457 microsatellite CK934457_ssr457:457..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            +++YRGVR+RPWG++AAEIRDPN K +RVWLGTF+TA EAA AYD AAF  RG KA LNFP
Sbjct:   67 QRNYRGVRQRPWGKWAAEIRDPN-KAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLE 670
            +  YRG+R+RPWG++AAEIRDP RKGSR WLGTF+TA EAA+AYD AA R+RG+KA +NFP E
Sbjct:  125 KNQYRGIRQRPWGKWAAEIRDP-RKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLE 670
            +  YRG+R+RPWG++AAEIRDP R+G+R+WLGTF+TA EAA+AYD AA R+RGSKA +NFP E
Sbjct:  122 KNQYRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEE 183          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLE 670
            +E  YRGVR+RPWGR+AAEIRDP +K SRVWLGTF++AV+AA+AYD AA  LRG KA  NFP++
Sbjct:   23 KEPRYRGVRKRPWGRFAAEIRDPLKK-SRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPID 85          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV 673
            +HYRGVR+RPWG++AAEIRDP +K +RVWLGTFETA  AA AYD AA + +GSKA LNFP  V
Sbjct:   88 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFPERV 149          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV 673
            +++ YRGVR+RPWG++AAEIRDP+R  +RVWLGTF+TA  AA+AYD AA R RG+KA LNFP +V
Sbjct:   73 KKRRYRGVRQRPWGKWAAEIRDPHR-AARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPEDV 136          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.008e-18
Identity = 45/67 (67.16%), Postives = 52/67 (77.61%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGG 679
            +   Y+G+RRRPWGR+AAEIRDP  KG RVWLGTF TA EAA+AYD  A R+RG+KA LNFP E  G
Sbjct:   21 QSSRYKGIRRRPWGRWAAEIRDPI-KGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSG 86          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            +E  YRGVR+RPWGRYAAEIRDP +K +RVWLGTF+TA EAA+AYD AA   RG+KA  NFP
Sbjct:   21 KEIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            YRG+R+RPWG++AAEIRDP+ KG RVWLGTF+TA EAA+AYD AA ++RG KA LNFP
Sbjct:   50 YRGIRQRPWGKWAAEIRDPS-KGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP 106          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            YRG+R+RPWG++AAEIRDP RKG RVWLGTF TA EAA AYD AA ++RG KA LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
The following BLAST results are available for this feature:
BLAST of CK934457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
EF112_ARATH8.076e-1972.13Ethylene-responsive transcription factor ERF112 OS... [more]
RAP22_ARATH1.378e-1869.84Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH1.378e-1868.25Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF83_ARATH1.378e-1868.75Ethylene-responsive transcription factor 7 OS=Arab... [more]
EF114_ARATH1.378e-1869.84Ethylene-responsive transcription factor ERF114 OS... [more]
EF110_ARATH2.350e-1866.15Ethylene-responsive transcription factor ERF110 OS... [more]
ERF73_ARATH4.008e-1867.16Ethylene-responsive transcription factor ERF073 OS... [more]
ERF78_ARATH5.235e-1870.97Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF71_ARATH1.523e-1772.41Ethylene-responsive transcription factor ERF071 OS... [more]
RAP23_ARATH1.989e-1774.14Ethylene-responsive transcription factor RAP2-3 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934457 ID=CK934457; Name=CK934457; organism=Citrus sinensis; type=EST; length=685bp
GGGGAAAATACACCAAACCAATTTCCATTTACATTTCATCTCATCTTCAA
TACCAACTGTAGCTTTTCTTTTAAATATGGCATCTCTGAATGAAGCATCA
ACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTTACTTC
TTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCTCAAA
GCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAACAGTT
ACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTTCAAG
CACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATACCCC
AAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGATGCT
GATAACCCAGTTGCTGTGAAAAATAAAGATCCAGATGCTGCTGCTGATAA
TAATACTAATAATAATAATAAAAATAATGAGGAAAAGCATTACAGAGGAG
TAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCCGAAT
AGAAAAGGGAGCCGGGTTTGGCTTGGGACTTTTGAAACTGCCGTGGAAGC
CGCCAAAGCTTATGACAACGCTGCGTTTAGGCTGCGTGGAAGCAAAGCGA
TATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTG
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