CK934457

Overview
NameCK934457
Unique NameCK934457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934457_ssr457 microsatellite CK934457_ssr457:457..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 45/61 (73.77%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            E HYRGVR+RPWGRYAAEIRDP +K +RVWLGTF+T  EAA AYD AA  LRG KA  NFP
Sbjct:    9 EVHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGS-KAILNFPLE 670
            + YRGVR+RPWG++AAEIRD  R G RVWLGTF+TA EAA AYD AA R+RG+ KA  NF LE
Sbjct:  108 RKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLE 670
            +E  +RGVR+RPWGR+AAEIRDP +K +RVWLGTF++A EAA+AYD+AA  LRG KA  NFP++
Sbjct:   24 KEIRFRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPID 86          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.431e-17
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            YRGVR+RPWGRYAAEIRDP +K SRVWLGTF+T  EAA+AYD  A   RG+KA  NFP
Sbjct:   20 YRGVRKRPWGRYAAEIRDPFKK-SRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.787e-17
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV 673
            + YRGVR+RPWG++AAEIRDP  K +RVWLGTF+ A  AA+AYD AA R RG+KA LNFP  V
Sbjct:  183 RRYRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFPENV 244          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.559e-17
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            YRGVR+RPWG++AAEIRDP R  +RVWLGTFETA +AA+AYD AA   RG +A LNFP
Sbjct:  136 YRGVRQRPWGKFAAEIRDPKR-ATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFP 192          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.872e-17
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGGT 682
            +E  YRGVR+RPWGRYAAEIRDP +K +RVWLGTF+TA +AA+AYD AA   RG KA  NF + VG +
Sbjct:   27 KEIRYRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSS 93          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.289e-16
Identity = 41/60 (68.33%), Postives = 50/60 (83.33%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            + +RGVR+RPWG++AAEIRDP+R+  RVWLGTF+TA EAA  YDNAA +LRG  A LNFP
Sbjct:   85 RKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            +  +RG+R+RPWG++AAEIRDP RKG RVWLGTF +A EAA+AYD  A R+RG KA +NFP
Sbjct:  117 KNQFRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFP 176          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.684e-16
Identity = 40/61 (65.57%), Postives = 49/61 (80.33%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPL 667
            K +RGVR+RPWG++AAEIRDP ++  R+WLGTFETA EAA  YDNAA RLRG  A+ NF +
Sbjct:  123 KKFRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSI 182          
The following BLAST results are available for this feature:
BLAST of CK934457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF81_ARATH1.989e-1773.77Ethylene-responsive transcription factor 12 OS=Ara... [more]
ERF91_ARATH3.393e-1768.25Ethylene-responsive transcription factor ERF091 OS... [more]
ERF82_ARATH3.393e-1765.63Ethylene-responsive transcription factor 3 OS=Arab... [more]
ERF76_ARATH4.431e-1772.41Ethylene-responsive transcription factor 11 OS=Ara... [more]
ABR1_ARATH5.787e-1766.67Ethylene-responsive transcription factor ABR1 OS=A... [more]
EF109_ARATH7.559e-1770.69Ethylene-responsive transcription factor ERF109 OS... [more]
ERF79_ARATH9.872e-1764.71Ethylene-responsive transcription factor 8 OS=Arab... [more]
CRF1_ARATH1.289e-1668.33Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF1_ORYSJ1.684e-1665.57Ethylene-responsive transcription factor 1 OS=Oryz... [more]
CRF3_ARATH1.684e-1665.57Ethylene-responsive transcription factor CRF3 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934457 ID=CK934457; Name=CK934457; organism=Citrus sinensis; type=EST; length=685bp
GGGGAAAATACACCAAACCAATTTCCATTTACATTTCATCTCATCTTCAA
TACCAACTGTAGCTTTTCTTTTAAATATGGCATCTCTGAATGAAGCATCA
ACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTTACTTC
TTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCTCAAA
GCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAACAGTT
ACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTTCAAG
CACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATACCCC
AAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGATGCT
GATAACCCAGTTGCTGTGAAAAATAAAGATCCAGATGCTGCTGCTGATAA
TAATACTAATAATAATAATAAAAATAATGAGGAAAAGCATTACAGAGGAG
TAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCCGAAT
AGAAAAGGGAGCCGGGTTTGGCTTGGGACTTTTGAAACTGCCGTGGAAGC
CGCCAAAGCTTATGACAACGCTGCGTTTAGGCTGCGTGGAAGCAAAGCGA
TATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTG
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