CK934457

Overview
NameCK934457
Unique NameCK934457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934457_ssr457 microsatellite CK934457_ssr457:457..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: RAP29_ARATH (Ethylene-responsive transcription factor RAP2-9 OS=Arabidopsis thaliana GN=RAP2-9 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV 673
            EK Y+G+R R WG++ AEIR+PN++ SR+WLG+++TAV AA+AYD A F LRG  A LNFP EV
Sbjct:   33 EKRYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYKTAVAAARAYDTAVFYLRGPSARLNFPEEV 95          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPL 667
            +E  +RGVR+RPWGR+AAEIRDP +K +RVWLGTF++A +AA+AYD AA  LRG KA  NFPL
Sbjct:   24 KEIRFRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPL 85          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPL 667
            K +RGVR+RPWGR+AAEIRDP R G RVWLGT++T  EAA  YD AA +L+G  A+ NFP+
Sbjct:   96 KKFRGVRQRPWGRWAAEIRDPTR-GKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPV 155          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLE 670
            +K YRGVR+RPWG++AAEIRDP ++  R+WLGTF TA EAA  YDNAA +LRG  A+ NF ++
Sbjct:  114 QKKYRGVRQRPWGKWAAEIRDPEQR-RRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNFTVQ 175          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.091e-15
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            K YRGVR+RPWG++AAEIRDP+ + +R+WLGTF TA EAA AYD AA  L+G KA+ NF
Sbjct:  103 KKYRGVRQRPWGKFAAEIRDPSSR-TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.148e-15
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            EK +RGVR+RPWG++AAEIRDP ++  R+WLGT+ TA EAA  YDNAA +LRG  A+ NF
Sbjct:  119 EKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ESR1_ARATH (Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            YRGVRRRPWGRYAAEIRDP  K  R WLGTF+TA +AA AYD+AA   RG+KA  NF
Sbjct:   57 YRGVRRRPWGRYAAEIRDPMSK-ERRWLGTFDTAEQAACAYDSAARAFRGAKARTNF 112          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF54_ARATH (Ethylene-responsive transcription factor ERF054 OS=Arabidopsis thaliana GN=ERF054 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.075e-15
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            K YRGVR+R WG++ AEIR P R  +R+WLGTF+TA EAA AYD  AF+LRG  A LNFP
Sbjct:  141 KLYRGVRQRQWGKWVAEIRKP-RSRARLWLGTFDTAEEAAMAYDRQAFKLRGHSATLNFP 199          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF55_ARATH (Ethylene-responsive transcription factor ERF055 OS=Arabidopsis thaliana GN=ERF055 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            K YRGVR+R WG++ AEIR P R  +R+WLGTF+TA EAA AYD AAF+LRG  A LNFP
Sbjct:  141 KLYRGVRQRHWGKWVAEIRLP-RNRTRLWLGTFDTAEEAALAYDRAAFKLRGDSARLNFP 199          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ESR2_ARATH (Ethylene-responsive transcription factor ESR2 OS=Arabidopsis thaliana GN=ESR2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.207e-14
Identity = 42/57 (73.68%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            YRGVRRRPWGRYAAEIRDP  K  R WLGTF+TA EAA AYD AA  +RG KA  NF
Sbjct:   58 YRGVRRRPWGRYAAEIRDPLSK-ERRWLGTFDTAEEAACAYDCAARAMRGLKARTNF 113          
The following BLAST results are available for this feature:
BLAST of CK934457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RAP29_ARATH2.199e-1660.94Ethylene-responsive transcription factor RAP2-9 OS... [more]
ERF3_TOBAC2.199e-1666.67Ethylene-responsive transcription factor 3 OS=Nico... [more]
PTI6_SOLLC3.751e-1663.93Pathogenesis-related genes transcriptional activat... [more]
CRF4_ARATH3.751e-1661.90Ethylene-responsive transcription factor CRF4 OS=A... [more]
CRF6_ARATH1.091e-1566.10Ethylene-responsive transcription factor CRF6 OS=A... [more]
CRF2_ARATH4.148e-1563.33Ethylene-responsive transcription factor CRF2 OS=A... [more]
ESR1_ARATH5.417e-1571.93Ethylene-responsive transcription factor ESR1 OS=A... [more]
ERF54_ARATH7.075e-1565.00Ethylene-responsive transcription factor ERF054 OS... [more]
ERF55_ARATH9.240e-1566.67Ethylene-responsive transcription factor ERF055 OS... [more]
ESR2_ARATH1.207e-1473.68Ethylene-responsive transcription factor ESR2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934457 ID=CK934457; Name=CK934457; organism=Citrus sinensis; type=EST; length=685bp
GGGGAAAATACACCAAACCAATTTCCATTTACATTTCATCTCATCTTCAA
TACCAACTGTAGCTTTTCTTTTAAATATGGCATCTCTGAATGAAGCATCA
ACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTTACTTC
TTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCTCAAA
GCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAACAGTT
ACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTTCAAG
CACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATACCCC
AAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGATGCT
GATAACCCAGTTGCTGTGAAAAATAAAGATCCAGATGCTGCTGCTGATAA
TAATACTAATAATAATAATAAAAATAATGAGGAAAAGCATTACAGAGGAG
TAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCCGAAT
AGAAAAGGGAGCCGGGTTTGGCTTGGGACTTTTGAAACTGCCGTGGAAGC
CGCCAAAGCTTATGACAACGCTGCGTTTAGGCTGCGTGGAAGCAAAGCGA
TATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTG
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