CK934457

Overview
NameCK934457
Unique NameCK934457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934457_ssr457 microsatellite CK934457_ssr457:457..471. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: RA210_ARATH (Ethylene-responsive transcription factor RAP2-10 OS=Arabidopsis thaliana GN=RAP2-10 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGG 679
            +K Y+G+R R WG++ AEIR+PN++ SR+WLG++ T   AA+AYD A F LRG  A LNFP  + G
Sbjct:   27 DKPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYSTPEAAARAYDTAVFYLRGPSARLNFPELLAG 91          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF56_ARATH (Ethylene-responsive transcription factor ERF056 OS=Arabidopsis thaliana GN=ERF056 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            YRGVR+R WG++ AEIR P  + +R+WLGTFETA +AA AYD AAF+LRG  A LNFP
Sbjct:   71 YRGVRQRHWGKWVAEIRLPKNR-TRLWLGTFETAEKAALAYDQAAFQLRGDIAKLNFP 127          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: CRF5_ARATH (Ethylene-responsive transcription factor CRF5 OS=Arabidopsis thaliana GN=CRF5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            YRGVR+RPWG++AAEIRDP+ + +R+WLGTF TA EAA  YD AA R++G  A  NF
Sbjct:   99 YRGVRQRPWGKFAAEIRDPSSR-TRLWLGTFATAEEAAIGYDRAAIRIKGHNAQTNF 154          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: DRE2D_ARATH (Dehydration-responsive element-binding protein 2D OS=Arabidopsis thaliana GN=DREB2D PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            Y+GVR+R WG++ AEIR+PNR G+R+WLGTF+T+ EAA AYD+AA +L G +A LN P
Sbjct:   42 YKGVRQRTWGKWVAEIREPNR-GARLWLGTFDTSREAALAYDSAARKLYGPEAHLNLP 98          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: DRE2A_ARATH (Dehydration-responsive element-binding protein 2A OS=Arabidopsis thaliana GN=DREB2A PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            +RGVR+R WG++ AEIR+PNR GSR+WLGTF TA EAA AYD AA  + G  A LNFP
Sbjct:   79 FRGVRQRIWGKWVAEIREPNR-GSRLWLGTFPTAQEAASAYDEAAKAMYGPLARLNFP 135          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            E+  YRG R R WG++ +EIR+P RK SR+WLGTF TA  AA+A+D AA  ++GS AILNFP
Sbjct:   22 EKGVYRGARMRSWGKWVSEIREP-RKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFP 82          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF69_ARATH (Ethylene-responsive transcription factor ERF069 OS=Arabidopsis thaliana GN=ERF069 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  482 EKHYRGVRRRPWGRYAAEIRDPNRKG--SRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNF 661
            +K +RGVR+RPWG++AAEIR    KG   R+WLGTFETA EAA AYDNAA +L G  A  NF
Sbjct:   72 KKKFRGVRQRPWGKWAAEIRCGRVKGRPERIWLGTFETAEEAALAYDNAAIQLIGPDAPTNF 133          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF08_ARATH (Ethylene-responsive transcription factor ERF008 OS=Arabidopsis thaliana GN=ERF008 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  485 KHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGG 679
            K Y+G+R R WG++ AEIR+PN++ SR+WLG++ T   AA+AYD A F LRG  A LNFP  + G
Sbjct:   26 KPYKGIRMRKWGKWVAEIREPNKR-SRIWLGSYATPEAAARAYDTAVFYLRGPSARLNFPELLAG 89          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF61_ARATH (Ethylene-responsive transcription factor ERF061 OS=Arabidopsis thaliana GN=ERF061 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 2
Query:  479 EEKHYRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFP 664
            ++K YRGVR+R WG++ AEIR P  +  RVWLGT++TA  AA AYD AA++LRG  A LNFP
Sbjct:  132 KKKLYRGVRQRHWGKWVAEIRLPQNR-MRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFP 192          
BLAST of CK934457 vs. ExPASy Swiss-Prot
Match: ERF23_ARATH (Ethylene-responsive transcription factor ERF023 OS=Arabidopsis thaliana GN=ERF023 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 37/61 (60.66%), Postives = 46/61 (75.41%), Query Frame = 2
Query:  491 YRGVRRRPWGRYAAEIRDPNRKGSRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV 673
            Y GVR+R WG++ +EIR+P RK SR+WLG+F     AAKAYD AAF L+G KA LNFP E+
Sbjct:   45 YHGVRKRRWGKWVSEIREP-RKKSRIWLGSFPVPEMAAKAYDVAAFCLKGRKAQLNFPEEI 104          
The following BLAST results are available for this feature:
BLAST of CK934457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
RA210_ARATH7.822e-1453.03Ethylene-responsive transcription factor RAP2-10 O... [more]
ERF56_ARATH7.822e-1465.52Ethylene-responsive transcription factor ERF056 OS... [more]
CRF5_ARATH7.822e-1463.16Ethylene-responsive transcription factor CRF5 OS=A... [more]
DRE2D_ARATH1.022e-1362.07Dehydration-responsive element-binding protein 2D ... [more]
DRE2A_ARATH1.022e-1365.52Dehydration-responsive element-binding protein 2A ... [more]
ERF42_ARATH1.334e-1359.68Ethylene-responsive transcription factor ERF042 OS... [more]
ERF69_ARATH1.743e-1362.90Ethylene-responsive transcription factor ERF069 OS... [more]
ERF08_ARATH1.743e-1353.85Ethylene-responsive transcription factor ERF008 OS... [more]
ERF61_ARATH2.276e-1359.68Ethylene-responsive transcription factor ERF061 OS... [more]
ERF23_ARATH2.276e-1360.66Ethylene-responsive transcription factor ERF023 OS... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G07 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934457 ID=CK934457; Name=CK934457; organism=Citrus sinensis; type=EST; length=685bp
GGGGAAAATACACCAAACCAATTTCCATTTACATTTCATCTCATCTTCAA
TACCAACTGTAGCTTTTCTTTTAAATATGGCATCTCTGAATGAAGCATCA
ACTTTAGAACTCATCAGCCAGTATCTTCTCGCTGATCAGTACTTTACTTC
TTCAATTGATCATACCCATAGCTTCAAAAATATCTCAAACCTTCCTCAAA
GCCCGAGCTTATTCAACAACCCAACAACAACTACAACAGCAACAACAGTT
ACTACTACAACTGATCGTGATAATATAAACAGCAGAAACAAGCCTTCAAG
CACTTTAAAACAACGGAAGCCGGCCTGTGTAAAAAACGTAACCATACCCC
AAACTACAAGCTTCAATTTGATGAGCTGCTCCAATGTTAATGATGATGCT
GATAACCCAGTTGCTGTGAAAAATAAAGATCCAGATGCTGCTGCTGATAA
TAATACTAATAATAATAATAAAAATAATGAGGAAAAGCATTACAGAGGAG
TAAGGAGACGGCCGTGGGGCAGGTATGCAGCTGAAATCCGGGACCCGAAT
AGAAAAGGGAGCCGGGTTTGGCTTGGGACTTTTGAAACTGCCGTGGAAGC
CGCCAAAGCTTATGACAACGCTGCGTTTAGGCTGCGTGGAAGCAAAGCGA
TATTGAATTTCCCTCTCGAAGTTGGCGGGACTTTG
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