CK934463

Overview
NameCK934463
Unique NameCK934463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934463_ssr7 microsatellite CK934463_ssr7:7..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12009 contig Csv1_Contig12009:81..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_GEOSF (5'-nucleotidase surE OS=Geobacter sp. (strain FRC-32) GN=surE PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.473e-26
Identity = 69/181 (38.12%), Postives = 105/181 (58.01%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK 648
            I++TNDDG+ APGL +L   +    +  V V APD  +SAV H++T  HP+ A      G   +AV GTP DC +LG+  +L    PD+V+SGIN G+N G  V YSGTV+ A EA   G+P++++S   +   +   +Y  AA+  +     + A +R +  P   FLN+++P D+P  +
Sbjct:    3 ILLTNDDGVRAPGLNALAEAMTVLGQ--VFVIAPDREQSAVGHALTLHHPLRANKI---GENIFAVDGTPTDCVNLGI-HSLLSFKPDIVVSGINRGANLGDDVTYSGTVSAAMEATLMGIPAIAVS---LVTSAEGTNYAAAAQFAV----KLAATVREKGLPADTFLNVNVP-DLPRER 169          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_SYMTH (5'-nucleotidase surE OS=Symbiobacterium thermophilum GN=surE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 76/203 (37.44%), Postives = 111/203 (54.68%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTA--YAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFKMGWRR 702
            +++TNDDGI APG+ +L   +       V   APD  +SA  H+IT   P+     +  G  A   +V+GTPAD A L + +A+ P  PDLVISGIN G+N G  + YSGTVA A E    G+P++++S D        +DY+ AA+    +   +L E      PE   LN+++P  +P    KG ++TK G  I++  W R
Sbjct:    4 VLLTNDDGIFAPGINALRARMEQIPGLEVWAVAPDRERSASGHAITTYRPLFPVRVEIPGAVAPCISVTGTPADSAKLAI-EAILPRRPDLVISGINRGANLGTDIFYSGTVAAALEGPILGIPALAVSLD----SMTSSDYSAAADFAAQLALKVLEE----GLPEGTLLNVNVPA-LPREAIKGVRVTKVGRRIYRDQWVR 196          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_GEOMG (5'-nucleotidase surE OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=surE PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.536e-26
Identity = 78/194 (40.21%), Postives = 108/194 (55.67%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISA---RPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 672
            I+VTNDDG+ APG+RSL   L   N   V V APD  +SAV H++T  HP+ A   RPA F      AV GTP DC +LG+   L  S PD+V+SG+N G N G  + YSGTV+ A EA   G+P++++S    G   N   Y +A+     ++      +  +  P    LN+++P D+P  K  G  +T QG
Sbjct:    3 ILVTNDDGVRAPGIRSLAEAL--RNIGDVVVVAPDRERSAVGHALTLHHPLRASEIRPAVF------AVDGTPTDCVNLGI-HTLLGSRPDIVVSGVNCGGNMGDDITYSGTVSAAMEATLMGIPALAVSLATSGRGDN---YAVASAFAARLVRI----VSERGLPPDTLLNVNVP-DLPLEKLGGAVVTIQG 179          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_DESHY (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain Y51) GN=surE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 78/196 (39.80%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 687
            I++TNDDG  APGL++L   L     Y V + APDS KSA  HSIT   P+       D  T YAVSG PADC  L +  ++ P  PDLVISGIN G N G  V YSGTV+ A E    GVP++++S        +  DY  AA+     +   L ++R         +NI++P  +P    KG ++TK G ++++
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSIIPK-PDLVISGINNGPNLGTDVFYSGTVSAAMEGVLLGVPAIAVSL----ASFSAVDYKPAAQ----FVALSLPKLRLGP----GLININIP-PLPEKEWKGVRVTKLGKAVYE 183          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_DESHD (5'-nucleotidase surE OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=surE PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.924e-26
Identity = 78/196 (39.80%), Postives = 107/196 (54.59%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQGTSIFK 687
            I++TNDDG  APGL++L   L     Y V + APDS KSA  HSIT   P+       D  T YAVSG PADC  L +  ++ P  PDLVISGIN G N G  V YSGTV+ A E    GVP++++S        +  DY  AA+     +   L ++R         +NI++P  +P    KG ++TK G ++++
Sbjct:    3 ILLTNDDGYFAPGLQTLYTTLAEAG-YDVFIVAPDSQKSATGHSITLFEPLFITKHSLDRGTGYAVSGKPADCVKLAIQGSIIPK-PDLVISGINNGPNLGTDVFYSGTVSAAMEGVLLGVPAIAVSL----ASFSAVDYKPAAQ----FVALSLPKLRLGP----GLININIP-PLPEKEWKGVRVTKLGKAVYE 183          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_GEOSL (5'-nucleotidase surE OS=Geobacter sulfurreducens GN=surE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 74/191 (38.74%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNK--GYKLTKQG 672
            I+VTNDDG+ APG+ +L   L      TV V APD  +SAV H++T  HP+        G+  +AV GTP DC +LG+   L    PD+V+SG+N G N G  + YSGTV+ A EA   G+P++++S    G  SN   Y  AA     +      E+ ++  P   FLN+++P D+P  +  G  +T QG
Sbjct:    3 ILVTNDDGVHAPGIVALAEALRLVG--TVTVVAPDRERSAVGHALTLHHPLRVTEI-MAGI--FAVDGTPTDCVNLGI-HTLLAEAPDIVVSGVNRGGNLGDDITYSGTVSAALEATLMGIPAIAVSLATNGHGSN---YRAAAAFAAQLAR----EVLDRGLPRDTFLNVNVP-DLPAEELGGPVITSQG 179          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_CLOB6 (5'-nucleotidase surE OS=Clostridium botulinum (strain 657 / Type Ba4) GN=surE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25
Identity = 76/212 (35.85%), Postives = 120/212 (56.60%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQGTSIFKMGWRRVTSEMQGGKML 735
            I++TNDDGI+A G+ +L  +L  +  + V + AP++ +SA SHSIT   PI  +       V AY++SGTPADC  + + + L P   D+VISGIN G N G  ++YSGTV+ A E   + VPS+++S  ++  K+   +Y +AA+  L ++N     ++ +       LN+++P       KG K+ K G  IF   +     E +G K+L
Sbjct:    3 ILLTNDDGIEAEGINTLAELL--SKYHNVTMVAPENQRSASSHSITIYEPIIVKQVKKPYNVEAYSISGTPADCVRVALDK-LVPDNIDMVISGINKGLNIGNDILYSGTVSAAIEGSMYKVPSMAVSAQFI--KNKKENYKIAAKYALDMLN----RLKKEDLKNDVVLNLNIPFCSEEEIKGIKVCKVGNKIFNTRFSEEIDE-EGNKIL 204          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_PELTS (5'-nucleotidase surE OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=surE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 70/194 (36.08%), Postives = 108/194 (55.67%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGV--TAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 672
            I+++NDDGI A G+ +L   L   N   + + APD  +SA  H IT   P+  +   +       +AV GTPADC  LG+ +AL P+ PDLVISGIN+G N G  V+YSGTV+ A E   +G+P++++   SYD+        D++ + +    +++A          P++  LNI++P   P   G K+T+ G
Sbjct:    3 ILISNDDGIQAEGINALRACLQEQNE--IYIVAPDRERSATGHKITMHRPLRVKEWHYPEAKTVGWAVDGTPADCVKLGL-EALLPAPPDLVISGINLGPNLGTDVLYSGTVSAAIEGIINGIPAIAVSLASYDY-------RDFSFSGKLIKELVSAF-----GNRLPDKTLLNINVPPGKP--CGIKVTRLG 179          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_NATTJ (5'-nucleotidase surE OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=surE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 73/197 (37.06%), Postives = 110/197 (55.84%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDG----VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 672
            +++TNDDGI APG+ ++ + + S + +   V APD  +SA  H+IT   P+        G    +  Y+V+GTP+DC  L V +++    PDLVISGIN G+N G  V+YSGTV+GA EA    + S+++S   YD+        DY+ AA     I N I  +   + +     LN+++P    N  KG K+T+QG
Sbjct:    3 VLLTNDDGIYAPGIFAMAKEIASRDEFEAVVVAPDREQSATGHAITVHKPLRVNNVKKLGEKLEIPFYSVNGTPSDCVKLAV-ESVMDEKPDLVISGINRGANLGTDVLYSGTVSGAMEAAILNIKSIAVSLVDYDY-------EDYSTAASYTAYIANII--KDNPEEFENGTLLNVNVPAVEANQLKGVKITRQG 189          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_DESAP (5'-nucleotidase surE OS=Desulforudis audaxviator (strain MP104C) GN=surE PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 80/191 (41.88%), Postives = 108/191 (56.54%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPA-DFDG-VTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQG 672
            I++TNDDGI APGL +L R  +S    T+ + APD  +SA  HSIT   PI  R A   DG    + V GTPADC  L + ++L P  PDLVISGIN+G N G  V+YSGTV+ A E   +GVPS++IS      ++   +    A   LP++     E R + +     LNI++P   P   G +LT+ G
Sbjct:    3 ILLTNDDGIFAPGLEAL-RNALSDLAETIYIIAPDRERSATGHSITVHRPIRVREACHADGNCCGWIVDGTPADCVKLAL-ESLLPETPDLVISGINLGPNLGTDVLYSGTVSAAMEGLINGVPSLAISLA-SHREAEFEEAAAFARRLLPLV----FEYR-EIFTANTLLNINVPPGKP--VGVRLTRLG 183          
The following BLAST results are available for this feature:
BLAST of CK934463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_GEOSF3.473e-2638.125'-nucleotidase surE OS=Geobacter sp. (strain FRC-... [more]
SURE_SYMTH4.536e-2637.445'-nucleotidase surE OS=Symbiobacterium thermophil... [more]
SURE_GEOMG4.536e-2640.215'-nucleotidase surE OS=Geobacter metallireducens ... [more]
SURE_DESHY5.924e-2639.805'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_DESHD5.924e-2639.805'-nucleotidase surE OS=Desulfitobacterium hafnien... [more]
SURE_GEOSL1.011e-2538.745'-nucleotidase surE OS=Geobacter sulfurreducens G... [more]
SURE_CLOB61.011e-2535.855'-nucleotidase surE OS=Clostridium botulinum (str... [more]
SURE_PELTS1.320e-2536.085'-nucleotidase surE OS=Pelotomaculum thermopropio... [more]
SURE_NATTJ1.320e-2537.065'-nucleotidase surE OS=Natranaerobius thermophilu... [more]
SURE_DESAP1.320e-2541.885'-nucleotidase surE OS=Desulforudis audaxviator (... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934463 ID=CK934463; Name=CK934463; organism=Citrus sinensis; type=EST; length=736bp
GGGGAATTCTTCTTCTTCTTCTTCTTGGACCGAACAATCCTGTAGCCGGA
GGAAGAAATGGAGCGTCGTGGAATCGCTATTGTTAACTCCGATCACAAGC
CAACGATTATGGTCACCAACGACGACGGGATCGACGCGCCTGGTTTGCGT
TCCCTCGTCCGCGTTCTCGTCTCCACCAATCGCTACACCGTCCAAGTCTG
CGCCCCCGATTCAGGAAAATCGGCTGTTAGTCATAGTATTACTTGGCGTC
ACCCAATTTCGGCCAGACCAGCAGATTTTGATGGAGTTACAGCCTATGCC
GTGTCTGGAACTCCAGCAGATTGTGCATCGTTGGGTGTCTCGCAAGCACT
CTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGCATAAACATGGGTAGCA
ACTGTGGTTATCATGTTGTTTACTCTGGGACAGTTGCAGGTGCTCGAGAG
GCTTTCTTTCATGGTGTACCGTCTGTCTCTATATCATACGACTGGGTTGG
AGGTAAGAGCAATGTTAATGATTACACACTCGCTGCTGAGGCTTGTTTAC
CTATTATAAATGCAATACTGGCCGAGATCAGGAATCAAACTTATCCTGAA
AGATGCTTTCTAAACATAGATCTACCTACAGATATTCCTAATAATAAGGG
GTATAAACTTACTAAGCAGGGTACGAGCATATTCAAAATGGGGTGGAGAC
GAGTCACTTCTGAGATGCAAGGAGGGAAGATGTTAT
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