CK934463

Overview
NameCK934463
Unique NameCK934463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934463_ssr7 microsatellite CK934463_ssr7:7..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12009 contig Csv1_Contig12009:81..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_CAMJE (5'-nucleotidase surE OS=Campylobacter jejuni GN=surE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 73/196 (37.24%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVS-GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPTDIPNNKGYKLTKQGTSIF 684
            I++TNDDG ++ GL+ L+++L    +  + + AP S KSA SHSIT   P+        G   Y +  GTPADC  L +       +PDLVISGIN G+N G  + YSGT AGA EA   G+P++++S  +   +  + DY  A    L I   I+  I ++ +P  ++ FLNI+ P      KG K+ K G  ++
Sbjct:    4 ILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSACSHSITLTKPLRFVKV---GKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVGEDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKEL-DYKNA----LQITKKIIQNIFDKGFPLEKKEFLNINFPAK-SKIKGIKICKAGKRVY 190          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_CAMJ8 (5'-nucleotidase surE OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=surE PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.550e-25
Identity = 73/196 (37.24%), Postives = 108/196 (55.10%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVS-GTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYP--ERCFLNIDLPTDIPNNKGYKLTKQGTSIF 684
            I++TNDDG ++ GL+ L+++L    +  + + AP S KSA SHSIT   P+        G   Y +  GTPADC  L +       +PDLVISGIN G+N G  + YSGT AGA EA   G+P++++S  +   +  + DY  A    L I   I+  I ++ +P  ++ FLNI+ P      KG K+ K G  ++
Sbjct:    4 ILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSACSHSITLTKPLRFVKV---GKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVGEDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKEL-DYKNA----LQITKKIIQNIFDKGFPLEKKEFLNINFPAK-SKIKGIKICKAGKRVY 190          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_WOLSU (5'-nucleotidase surE OS=Wolinella succinogenes GN=surE PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.554e-25
Identity = 76/199 (38.19%), Postives = 110/199 (55.28%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAV-SGTPADCASLGVSQALFP--SVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYP--ERCFLNIDLP-TDIPNNKGYKLTKQGTSIF 684
            I++TNDDG D+PGL +L   L      TV   AP + KSA  H +T   P+     D D    Y +  GTP DC  L ++ AL+   S PDL+ISGIN+GSN G  + YSGT +GA E   HG+PSV+ S       +   D+ LA +    ++  +  +I +  +P  +R FLN+++P   I   KGYK+T+ G  ++
Sbjct:    5 ILITNDDGFDSPGLLALKEALCDVAHLTV--VAPANEKSACGHGLTLTSPLRFIKLDDD---VYKLRDGTPTDCIYLALN-ALYEEHSKPDLIISGINLGSNMGEDITYSGTASGAMEGVIHGIPSVAFSQLLHDKNTFGFDFALAKK----VVRELTLKILSGGFPLGDRKFLNVNIPYVGIEEFKGYKVTEMGYRLY 193          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_SYNS3 (5'-nucleotidase surE OS=Synechococcus sp. (strain CC9311) GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 69/180 (38.33%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 627
            I+++NDDG+ A G+R+L     +       VC PD  +SA  H +T + PI A  AD  F+ G+ A+A SGTPADC  L + + L P  PDLV+SGIN G N G  V  SGTVA A E    G+P++++S   + W        ++  AA   + +  A LA+     +PE   LN+++P
Sbjct:    6 ILISNDDGVFADGIRTLAAAAAAAGHQVTVVC-PDQERSATGHGLTLQTPIRAERADELFEPGIKAWACSGTPADCMKLALFE-LLPEKPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGLPAMAVSSACFQW-------REFQAAAHLAIQVAEAALAD----QWPENLLLNLNVP 172          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_SYNPW (5'-nucleotidase surE OS=Synechococcus sp. (strain WH7803) GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 73/188 (38.83%), Postives = 101/188 (53.72%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPAD--FD-GVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNNKG 651
            I+++NDDG+ A G+R+L     +       VC PD  +SA  H +T + PI A  AD  FD G++A+A SGTPADC  L + + L    PDLV+SGIN G N G  V  SGTVA A E    G+PS++IS   + W        D+  AA   + +  A L +     +PE   LN+++P   P   G
Sbjct:    6 ILISNDDGVFADGIRALAGAAAAAGHQVTVVC-PDRERSATGHGLTLQTPIRAEKADSLFDAGISAWACSGTPADCMKLALFE-LMDEAPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGLPSMAISSACFQW-------RDFQGAAALAVEVATAALRD----QWPENLLLNLNIPPCRPEVMG 180          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_PROMA (5'-nucleotidase surE OS=Prochlorococcus marinus GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADF---DGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSI---SYDWVGGKSNVNDYTLAAEACLPII-NAILAEIRNQTYPERCFLNIDLPTDIPNNKGYKLTKQGTSIFKMGWRRVT 708
            I+++NDDG+ A G+R+L  +  ++  + V V  PD  +SA  H +T + PI A  AD    +G+ A+  SGTPADC  L +++ L    PDL++SGIN G N G  +  SGTVA A E    G+PS+++   S+ W         + LA E  L I  NAI     NQ +P++  LN+++P       G           K GW R++
Sbjct:    6 ILISNDDGVFAEGIRTLA-IAAASRGHEVTVVCPDQERSATGHGLTLQAPIRAERADELFNEGIQAWGCSGTPADCVKLALNE-LLKEKPDLILSGINHGPNLGTDIFCSGTVAAALEGTLEGIPSLAVSIASFQW-------RKFKLAGELALNIAENAI-----NQKWPKKLLLNLNIPPCDSEQMG-----------KPGWTRLS 188          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_PARL1 (5'-nucleotidase surE OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=surE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.117e-24
Identity = 74/191 (38.74%), Postives = 106/191 (55.50%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW-VGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 672
            I+VTNDDGI APGL+ L ++    +R  V V AP+  +S  +HS++  +P+  R         YAV GTP+DC  + V   L    PDLV+SGIN G N    V YSGT+A A E    G+PS+++S  +   G +NV   T  AE   P    IL ++    +PE   +NI+ P  +P +  G ++T+QG
Sbjct:   11 ILVTNDDGIHAPGLKVLEKIAHKLSR-DVWVVAPEDEQSGSAHSLSLANPLRVRKLT---ARKYAVRGTPSDCVLMAVRHILKDEQPDLVVSGINRGQNIADDVTYSGTIAAAMEGTQLGIPSIALSQAFGFSGSANVKWST--AEHFAP---DILKKLIAAGWPEEVLININFPDVVPGSVTGIEVTRQG 192          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_SYNPX (5'-nucleotidase surE OS=Synechococcus sp. (strain WH8102) GN=surE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 70/180 (38.89%), Postives = 97/180 (53.89%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPAD---FDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS---YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP 627
            ++++NDDG+ A G+R+L    V+       VC PD  +SA  H +T + PI A  AD     GVTA+A SGTPADC  L + + L    PDLV+SGIN G N G  V  SGTVA A E    G+PS++IS   + W         +   AE  + +    LA+     +PE   LN+++P
Sbjct:    3 VLISNDDGVFAEGIRTLAAAAVARGHDVTVVC-PDQERSATGHGLTLQTPIRAERADELFVPGVTAWACSGTPADCMKLALFE-LVKDKPDLVLSGINHGPNLGTDVFCSGTVAAAMEGTLEGIPSMAISSACFQW-------RQFQAGAELAVEVAEQALAD----QWPENLLLNLNIP 169          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_KOSOT (5'-nucleotidase surE OS=Kosmotoga olearia (strain TBF 19.5.1) GN=surE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 79/191 (41.36%), Postives = 108/191 (56.54%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTA-YAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS-YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPT-DIPNNKGYKLTKQ 669
            I+VTNDDGI APG+  L + L    +++V V APD  +SA  H+IT R P+ A+       T  YA++GTPADC  LG+  A+     +LV+SGIN G N G  ++YSGTV+GA E      PS++IS  DW     N   Y  AAE  L  ++           PE   LNI++P+ D    KG+K+T+Q
Sbjct:    3 ILVTNDDGIMAPGINILAQKLAE--KHSVLVVAPDVERSATGHAITIRTPLWAKEVKVGEKTVGYAINGTPADCVKLGIL-AIADFEIELVVSGINKGPNLGTDILYSGTVSGALEGAVMEKPSIAISAADW-----NNPKYETAAEFLLEFLDTYDV----TKMPEFTALNINVPSVDRAELKGWKVTRQ 181          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_GEOBB (5'-nucleotidase surE OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=surE PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.459e-24
Identity = 67/178 (37.64%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIP 639
            I++TNDDG+ +PGL +L++ +       V V APD  +SAVSH++T  HP+ A      G   ++V GTP DC +LG+  +L    PDLVISG+N G+N    V YSGTVA A EA   G+P++++S        +  ++  AA AC      +   +  +  P   +LN+++P D+P
Sbjct:    3 ILLTNDDGVHSPGLAALIKKVSEVAE--VVVVAPDREQSAVSHALTLHHPLRAARI---GANVFSVEGTPTDCVNLGI-HSLLSYRPDLVISGVNRGANIADDVTYSGTVAAALEATLMGIPAIAVSL----VTRSAGEHFEAAAACAA---KLAVTVHQKGLPRDTYLNVNVP-DLP 166          
The following BLAST results are available for this feature:
BLAST of CK934463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_CAMJE6.550e-2537.245'-nucleotidase surE OS=Campylobacter jejuni GN=su... [more]
SURE_CAMJ86.550e-2537.245'-nucleotidase surE OS=Campylobacter jejuni subsp... [more]
SURE_WOLSU8.554e-2538.195'-nucleotidase surE OS=Wolinella succinogenes GN=... [more]
SURE_SYNS31.117e-2438.335'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_SYNPW1.117e-2438.835'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_PROMA1.117e-2435.585'-nucleotidase surE OS=Prochlorococcus marinus GN... [more]
SURE_PARL11.117e-2438.745'-nucleotidase surE OS=Parvibaculum lavamentivora... [more]
SURE_SYNPX1.459e-2438.895'-nucleotidase surE OS=Synechococcus sp. (strain ... [more]
SURE_KOSOT1.459e-2441.365'-nucleotidase surE OS=Kosmotoga olearia (strain ... [more]
SURE_GEOBB1.459e-2437.645'-nucleotidase surE OS=Geobacter bemidjiensis (st... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934463 ID=CK934463; Name=CK934463; organism=Citrus sinensis; type=EST; length=736bp
GGGGAATTCTTCTTCTTCTTCTTCTTGGACCGAACAATCCTGTAGCCGGA
GGAAGAAATGGAGCGTCGTGGAATCGCTATTGTTAACTCCGATCACAAGC
CAACGATTATGGTCACCAACGACGACGGGATCGACGCGCCTGGTTTGCGT
TCCCTCGTCCGCGTTCTCGTCTCCACCAATCGCTACACCGTCCAAGTCTG
CGCCCCCGATTCAGGAAAATCGGCTGTTAGTCATAGTATTACTTGGCGTC
ACCCAATTTCGGCCAGACCAGCAGATTTTGATGGAGTTACAGCCTATGCC
GTGTCTGGAACTCCAGCAGATTGTGCATCGTTGGGTGTCTCGCAAGCACT
CTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGCATAAACATGGGTAGCA
ACTGTGGTTATCATGTTGTTTACTCTGGGACAGTTGCAGGTGCTCGAGAG
GCTTTCTTTCATGGTGTACCGTCTGTCTCTATATCATACGACTGGGTTGG
AGGTAAGAGCAATGTTAATGATTACACACTCGCTGCTGAGGCTTGTTTAC
CTATTATAAATGCAATACTGGCCGAGATCAGGAATCAAACTTATCCTGAA
AGATGCTTTCTAAACATAGATCTACCTACAGATATTCCTAATAATAAGGG
GTATAAACTTACTAAGCAGGGTACGAGCATATTCAAAATGGGGTGGAGAC
GAGTCACTTCTGAGATGCAAGGAGGGAAGATGTTAT
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