CK934463

Overview
NameCK934463
Unique NameCK934463
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934463_ssr7 microsatellite CK934463_ssr7:7..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12009 contig Csv1_Contig12009:81..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_AGRVS (5'-nucleotidase surE OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=surE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 75/192 (39.06%), Postives = 103/192 (53.65%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSIS--YDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 672
            I++TNDDGI A GL  L R+   T    V + AP++ +S ++HS+T   P+  R     G   YA+ GTP DC  + + + L P  PDLV+SG+N G+N    V YSGTVAGA E   HGV S ++S  Y +V G S   D     E   P   A++A++     P   FLN++ P   P    G  +T QG
Sbjct:    3 ILLTNDDGIHADGLAVLERI-ARTLSDDVWIVAPETDQSGLAHSLTLSEPLRLRQL---GENRYALRGTPTDCVIMAIRK-LLPGKPDLVLSGVNAGANLADDVTYSGTVAGAIEGTVHGVRSFALSQAYSYVAGHSIPWD---VVETHAP---ALIAKLMRIDLPPGTFLNLNFPNCEPGEVAGVDVTSQG 183          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_AGRT5 (5'-nucleotidase surE OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=surE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.545e-24
Identity = 74/211 (35.07%), Postives = 113/211 (53.55%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQGTSIFKMGWRRVTSEMQGGKML 735
            I++TNDDG+ A GL  L R+   T    V + AP++ +S ++HS+T   P+  R         +A+ GTP DC  +G+ + L P  PDLV+SG+N G+N    V YSGT+AGA E    GV S ++S  +  G+  V  + + AE   P    +L ++ N   P+  FLN++ P   P + +G  +T QG    K+ +     E Q G+ L
Sbjct:    3 ILLTNDDGVHAEGLAVLERI-ARTLSDDVWIVAPETDQSGLAHSLTLSEPLRLRKVSDKH---FALRGTPTDCVIMGIREVL-PEKPDLVLSGVNAGANMADDVTYSGTIAGAIEGTLQGVRSFALSQAFSHGEGRVVPWEV-AETYAP---DLLRKLMNVDLPDGTFLNLNFPNCAPKDMQGVSVTGQG----KLDFGLTVEERQDGRGL 200          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_XYLFT (5'-nucleotidase surE OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 69/191 (36.13%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQG 672
            ++V+NDDG+DAPG++ L   L +   + V V APD  +S  S+S+T   PI A+  D      Y+V+GTP DC  L ++  L    PD+V+SGIN   N G  V+YSGTV+ A E  F G+P+V++S   +  +      Y  AA A + I+    A+++    P    LN+++P       +G+K+T+ G
Sbjct:    3 VLVSNDDGVDAPGIKILADALRNAG-HEVMVVAPDRDRSGASNSLTLDTPIRAKQIDMH---TYSVAGTPTDCVHLALT-GLLNYDPDIVVSGINNTGNLGDDVIYSGTVSAAMEGRFLGLPAVAVSLVTLCREGQQAPQYETAAHAAINIV----AQLKTDPLPADTILNVNVPDVTWQQMRGFKVTRLG 184          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_XYLFM (5'-nucleotidase surE OS=Xylella fastidiosa (strain M12) GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 69/191 (36.13%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQG 672
            ++V+NDDG+DAPG++ L   L +   + V V APD  +S  S+S+T   PI A+  D      Y+V+GTP DC  L ++  L    PD+V+SGIN   N G  V+YSGTV+ A E  F G+P+V++S   +  +      Y  AA A + I+    A+++    P    LN+++P       +G+K+T+ G
Sbjct:    3 VLVSNDDGVDAPGIKILADALRNAG-HEVMVVAPDRDRSGASNSLTLDTPIRAKQIDMH---TYSVAGTPTDCVHLALT-GLLNYDPDIVVSGINNTGNLGDDVIYSGTVSAAMEGRFLGLPAVAVSLVTLCREGQQAPQYETAAHAAINIV----AQLKTDPLPADTILNVNVPDVTWQQMRGFKVTRLG 184          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_XYLFA (5'-nucleotidase surE OS=Xylella fastidiosa GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 69/191 (36.13%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQG 672
            ++V+NDDG+DAPG++ L   L +   + V V APD  +S  S+S+T   PI A+  D      Y+V+GTP DC  L ++  L    PD+V+SGIN   N G  V+YSGTV+ A E  F G+P+V++S   +  +      Y  AA A + I+    A+++    P    LN+++P       +G+K+T+ G
Sbjct:    3 VLVSNDDGVDAPGIKILADALRNAG-HEVMVVAPDRDRSGASNSLTLDTPIRAKQIDMH---TYSVAGTPTDCVHLALT-GLLNYDPDIVVSGINNTGNLGDDVIYSGTVSAAMEGRFLGLPAVAVSLVTLYREGQQAPQYETAAHAAINIV----AQLKTDPLPADTILNVNVPDVTWQQMRGFKVTRLG 184          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_XYLF2 (5'-nucleotidase surE OS=Xylella fastidiosa (strain M23) GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 69/191 (36.13%), Postives = 107/191 (56.02%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGK-SNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLP-TDIPNNKGYKLTKQG 672
            ++V+NDDG+DAPG++ L   L +   + V V APD  +S  S+S+T   PI A+  D      Y+V+GTP DC  L ++  L    PD+V+SGIN   N G  V+YSGTV+ A E  F G+P+V++S   +  +      Y  AA A + I+    A+++    P    LN+++P       +G+K+T+ G
Sbjct:    3 VLVSNDDGVDAPGIKILADALRNAG-HEVMVVAPDRDRSGASNSLTLDTPIRAKQIDMH---TYSVAGTPTDCVHLALT-GLLNYDPDIVVSGINNTGNLGDDVIYSGTVSAAMEGRFLGLPAVAVSLVTLCREGQQAPQYETAAHAAINIV----AQLKTDPLPADTILNVNVPDVTWQQMRGFKVTRLG 184          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_STRM5 (5'-nucleotidase surE OS=Stenotrophomonas maltophilia (strain R551-3) GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 73/191 (38.22%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 672
            I+V+NDDG+DA G+R L  VL     + V V APD  +S  S+S+T   PI  +  D   V+   V+GTP DC  L ++  L    PD+V+SGIN  +N G  V+YSGTV+ A E  F G+P+V++S   V    +   +  AA A + I+    A ++    P    LN+++P D+P N  KG+++T+ G
Sbjct:    3 ILVSNDDGVDAAGIRMLASVLREAG-HEVTVVAPDRDRSGASNSLTLDLPIRLKRIDHYTVS---VAGTPTDCVHLALT-GLLEFEPDIVVSGINNAANLGDDVIYSGTVSAAMEGRFLGLPAVAVSL--VSRNHDPKHFETAARAAVEIV----ARLKADPLPADTILNVNVP-DLPWNEVKGFEVTRLG 181          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_METSB (5'-nucleotidase surE OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 69/190 (36.32%), Postives = 103/190 (54.21%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN-KGYKLTKQG 672
            I+VTNDDG+ APGLR L  +  + +   V V AP+S +S V+HS++   P+  R         YAV GTP DC  +GV + L    PD+V+SG+N G N    V+YSGTVAGA E    G+P++++S  + G       +   A+A  P    ++ +I     P    +N++ P   P+  +G  +T QG
Sbjct:    3 ILVTNDDGVHAPGLRVLEEIAAALSD-DVYVVAPESDQSGVAHSLSLNDPLRLRRIS---ERRYAVKGTPTDCVIMGVRRILDGREPDVVLSGVNSGQNVAEDVIYSGTVAGAMEGAILGIPAIALSQAY-GRAGREKAFWSCAQAHAP---GLIEKILATGVPANTVVNVNFPDCPPDAVEGVAVTAQG 184          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_METNO (5'-nucleotidase surE OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 68/159 (42.77%), Postives = 91/159 (57.23%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDW-VGGKSNVNDYTLAAEACLPIINAILAEI 579
            I+VTNDDGI APGL+ L  +    +   V V AP++ +S VSHS++   P+  R       T +AV GTP+DC  +GV   L    PDLV+SG+N G N    V YSGTVAGA E    GV S+++S  + VGG++NV  +T A      I   + A I
Sbjct:    3 ILVTNDDGIHAPGLKVLEEIARELSD-DVWVVAPETDQSGVSHSLSLNDPLRLRRV---AETRFAVKGTPSDCVIMGVRHILKERGPDLVLSGVNRGQNVAEDVTYSGTVAGAMEGTILGVRSIALSQAYGVGGRANVKWHTAAEHGARTIRRILEAGI 157          
BLAST of CK934463 vs. ExPASy Swiss-Prot
Match: SURE_METCA (5'-nucleotidase surE OS=Methylococcus capsulatus GN=surE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 1
Query:  106 IMVTNDDGIDAPGLRSLVRVLVSTNRYTVQVCAPDSGKSAVSHSITWRHPISARPADFDGVTAYAVSGTPADCASLGVSQALFPSVPDLVISGINMGSNCGYHVVYSGTVAGAREAFFHGVPSVSISYDWVGGKSNVNDYTLAAEACLPIINAILAEIRNQTYPERCFLNIDLPTDIPNN--KGYKLTKQG 672
            I+++NDDG  APGLR+L   L    + TV   AP+  +S  S+S+T   P+ A  A+   +    V GTP DC  L ++  L  S PD+V +GIN G+N G  V+YSGTVA A E  F G+P+V+IS        N   +  AA+  +     +L  IR    P    LN+++P DIP +  +GY+ T+ G
Sbjct:    3 ILLSNDDGYAAPGLRALAAALSPLAKITV--VAPERNRSGASNSLTLERPLRATRAENGFIR---VDGTPTDCVHLAIT-GLLDSEPDMVFAGINHGANLGDDVIYSGTVAAATEGRFLGLPAVAISL----AAHNPEHFETAAQVAI----ELLERIRENPLPADTILNVNVP-DIPPDELRGYRATRLG 178          
The following BLAST results are available for this feature:
BLAST of CK934463 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SURE_AGRVS5.545e-2439.065'-nucleotidase surE OS=Agrobacterium vitis (strai... [more]
SURE_AGRT55.545e-2435.075'-nucleotidase surE OS=Agrobacterium tumefaciens ... [more]
SURE_XYLFT7.242e-2436.135'-nucleotidase surE OS=Xylella fastidiosa (strain... [more]
SURE_XYLFM7.242e-2436.135'-nucleotidase surE OS=Xylella fastidiosa (strain... [more]
SURE_XYLFA7.242e-2436.135'-nucleotidase surE OS=Xylella fastidiosa GN=surE... [more]
SURE_XYLF27.242e-2436.135'-nucleotidase surE OS=Xylella fastidiosa (strain... [more]
SURE_STRM57.242e-2438.225'-nucleotidase surE OS=Stenotrophomonas maltophil... [more]
SURE_METSB7.242e-2436.325'-nucleotidase surE OS=Methylocella silvestris (s... [more]
SURE_METNO7.242e-2442.775'-nucleotidase surE OS=Methylobacterium nodulans ... [more]
SURE_METCA7.242e-2438.225'-nucleotidase surE OS=Methylococcus capsulatus G... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H01 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934463 ID=CK934463; Name=CK934463; organism=Citrus sinensis; type=EST; length=736bp
GGGGAATTCTTCTTCTTCTTCTTCTTGGACCGAACAATCCTGTAGCCGGA
GGAAGAAATGGAGCGTCGTGGAATCGCTATTGTTAACTCCGATCACAAGC
CAACGATTATGGTCACCAACGACGACGGGATCGACGCGCCTGGTTTGCGT
TCCCTCGTCCGCGTTCTCGTCTCCACCAATCGCTACACCGTCCAAGTCTG
CGCCCCCGATTCAGGAAAATCGGCTGTTAGTCATAGTATTACTTGGCGTC
ACCCAATTTCGGCCAGACCAGCAGATTTTGATGGAGTTACAGCCTATGCC
GTGTCTGGAACTCCAGCAGATTGTGCATCGTTGGGTGTCTCGCAAGCACT
CTTTCCTTCGGTCCCTGACCTGGTAATCAGTGGCATAAACATGGGTAGCA
ACTGTGGTTATCATGTTGTTTACTCTGGGACAGTTGCAGGTGCTCGAGAG
GCTTTCTTTCATGGTGTACCGTCTGTCTCTATATCATACGACTGGGTTGG
AGGTAAGAGCAATGTTAATGATTACACACTCGCTGCTGAGGCTTGTTTAC
CTATTATAAATGCAATACTGGCCGAGATCAGGAATCAAACTTATCCTGAA
AGATGCTTTCTAAACATAGATCTACCTACAGATATTCCTAATAATAAGGG
GTATAAACTTACTAAGCAGGGTACGAGCATATTCAAAATGGGGTGGAGAC
GAGTCACTTCTGAGATGCAAGGAGGGAAGATGTTAT
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