CK934466

Overview
NameCK934466
Unique NameCK934466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13179 contig Csv1_Contig13179:82..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5A_PIG (Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.521e-51
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.521e-51
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.521e-51
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 9.521e-51
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.521e-51
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 9.521e-51
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N  ++  K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F  IAK+LP+  P +
Sbjct:   10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.243e-50
Identity = 102/180 (56.67%), Postives = 130/180 (72.22%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N  S  +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P S
Sbjct:   10 NGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQS 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.053e-49
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N     +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P +
Sbjct:   10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.053e-49
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N     +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P +
Sbjct:   10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188
[Close]
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.053e-49
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:  232 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 771
            N     +K  + KLVLLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF  IAK+LP+  P +
Sbjct:   10 NGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQN 188
The following BLAST results are available for this feature:
BLAST of CK934466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_PIG9.521e-5156.11Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A ... [more]
RAB5A_MOUSE9.521e-5156.11Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA9.521e-5156.11Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN9.521e-5156.11Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA9.521e-5156.11Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN9.521e-5156.11Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB5B_CHICK1.243e-5056.67Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RAB5B_PONAB1.053e-4955.56Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE1.053e-4955.56Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN1.053e-4955.56Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934466 ID=CK934466; Name=CK934466; organism=Citrus sinensis; type=EST; length=892bp
GGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAATC
AGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAATT
ACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATATTT
ATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGTTC
TGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGATG
CAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTGGG
AAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACCTC
CAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCAAG
ATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAAGA
TATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTTGT
TGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTGGG
TTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAGTT
GGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGATGG
CATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGCCA
AGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGACTT
CCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTGCT
GTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGATT
TGTGTATATTGTGATATATGATGTGGNNNNNTGTTTCATTTT
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