CK934466

Overview
NameCK934466
Unique NameCK934466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13179 contig Csv1_Contig13179:82..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.335e-36
Identity = 78/168 (46.43%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  238 GSSDAK-NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 738
            G ++AK +   K+VL+GDS VGKS I+ RF R +F   SK T+G  F ++T+ + D  TVK +IWDTAGQERY A+   YYRG       YDIT   +F+    W++EL+ H   +IV+ L+GNK DL  +R+VP +D  E+AEK G+FF+ETSA  A N+   F  +
Sbjct:    8 GDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVI-DHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTV 174          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.973e-36
Identity = 74/154 (48.05%), Postives = 102/154 (66.23%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 729
            K+VL+GDS VGKS I+ RF R +F   SK T+G  F ++T+A+Q  + VK +IWDTAGQERY A+   YYRG       YDIT   +F+    W++EL+ H   +IV+ L+GNK DL ++R VP +D  E+A+K G+FF+ETSA  A N+   F
Sbjct:   17 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKS-VKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAF 169          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.973e-36
Identity = 75/172 (43.60%), Postives = 109/172 (63.37%), Query Frame = 1
Query:  241 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            + D  +   KLVL+GDSGVGKS ++ RF + +F+  SK T+G  F ++T+ + D+  VK +IWDTAGQERY A+   YYRG       YD+T   +F  A  W+KEL+ H  P+IV+ L+GNK+DL     VP +DG  +AE+  ++F+ETSA  A N+   F E+  ++ R
Sbjct:    6 TDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNV-DAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYR 176          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            K+VL+GDSGVGKS ++ RF R +F   SK T+G  F ++T+ ++   TVK +IWDTAGQERY A+   YYRG       YD+T P +F     W+KEL+ H   +IV+ L+GNK DL   R V  +D   YAEK G+ FIETSA  A N+ + F+ I   + R
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVE-GRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYR 175          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.476e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            K+VL+GDSGVGKS ++ RF + +F+  SK T+G  F ++T+ + D   VK +IWDTAGQERY A+   YYRG       YD+T   +F     W+KEL+ H  P+IV+ LVGNK+DL     VP +DG  YAE+  + F+ETSA  A N+   F E+  ++ R
Sbjct:   15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKV-DGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYR 176          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.927e-35
Identity = 82/192 (42.71%), Postives = 115/192 (59.90%), Query Frame = 1
Query:  259 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS-------TTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQ-KHGSPDIVMALVGNKADLHEK--------------------REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            L+ KLVLLGDS VGKS IV RFV+  FD   + T+GA+FLSQ+I +  +         +KFEIWDTAGQERY +LAP+YYR        YDIT  DS  KA+ WV EL+ K G  D+V+ L+GNK DL ++                    R +  ++  +YA++ G+ F E SAKT + + ++F++I ++L
Sbjct:    2 LQFKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQDIGEKL 193          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.927e-35
Identity = 74/172 (43.02%), Postives = 107/172 (62.21%), Query Frame = 1
Query:  241 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            + D  +   KLVL+GDSGVGKS ++ RF R +F+  SK T+G  F ++++ + D   +K +IWDTAGQERY A+   YYRG       YD+T   +F  A  W+KEL+ H  P+IV+ L+GNK+DL     V  +DG  +AEK  ++F+ETSA  A N+   F E+  ++ R
Sbjct:    6 ADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNI-DGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYR 176          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 7.324e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 7.324e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 7.324e-35
Identity = 74/163 (45.40%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            K+VL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDI    ++   + W+KEL+ H   +IV+ LVGNK+DL   R VP  +   +AEKNG+ FIETSA  + N+   F+ I   + R
Sbjct:   13 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 174          
The following BLAST results are available for this feature:
BLAST of CK934466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11A_LOTJA1.335e-3646.43Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RB11D_TOBAC2.973e-3648.05Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11D_LOTJA2.973e-3643.60Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAA2A_ARATH8.652e-3646.63Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RAA1B_ARATH1.476e-3545.40Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
YPT52_YEAST1.927e-3542.71GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
RB11E_LOTJA1.927e-3543.02Ras-related protein Rab11E OS=Lotus japonicus GN=R... [more]
RB11A_RAT7.324e-3545.40Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT7.324e-3545.40Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB7.324e-3545.40Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934466 ID=CK934466; Name=CK934466; organism=Citrus sinensis; type=EST; length=892bp
GGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAATC
AGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAATT
ACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATATTT
ATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGTTC
TGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGATG
CAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTGGG
AAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACCTC
CAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCAAG
ATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAAGA
TATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTTGT
TGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTGGG
TTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAGTT
GGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGATGG
CATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGCCA
AGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGACTT
CCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTGCT
GTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGATT
TGTGTATATTGTGATATATGATGTGGNNNNNTGTTTCATTTT
back to top