CK934466

Overview
NameCK934466
Unique NameCK934466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K+V+LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   AE+ G  F+ETSAK+   +++LF EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-----VPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K+V+LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   AE+ G  F+ETSAK+   +++LF EI +++
Sbjct:    5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-----VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 56/177 (31.64%), Postives = 90/177 (50.85%), Query Frame = 1
Query:  265 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEEIAKRLPRP 759
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D  TV   +WDTAGQE Y  L PL YRG       + + S  S+ N ++ W+ EL KH +P + + LVG K DL + ++          +    G E  ++ G  ++IE S+KT  N+  +F+   K + +P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPEL-KHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYYIECSSKTQLNVKGVFDAAIKVVLQP 180          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 56/177 (31.64%), Postives = 88/177 (49.72%), Query Frame = 1
Query:  265 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEEIAKRLPRP 759
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D  TV   +WDTAGQE Y  L PL YRG       + + S  S+ N A+ W+ EL +H +P + + LVG K DL + ++          +    G E  +  G   +IE S+KT  N+  +F+   K + +P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 56/177 (31.64%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  265 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPRP 759
            +K V +GD  VGK+C+++ +    F      TV  +F +  +   D +TV   +WDTAGQE Y  L PL YRG       + + S  S+ N ++ W+ EL +H +P + + LVG K DL E R+          +    G E  +  G   ++E S+KT  N+  +F+   K + +P
Sbjct:    7 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPEL-RHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVYLECSSKTQQNVKAVFDAAIKVVLQP 180          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RABZ_DICDI (Ras-related protein RabZ OS=Dictyostelium discoideum GN=rabZ PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 46/161 (28.57%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  271 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            ++L+GD   GKS ++ RF   QF+   K + +     ++ I ++    +  + +DTAGQE++ AL+  YYR        YDI +  +F+    W++E+ +   P++ + ++ NK DL+EKR V   +  ++A+   +  IE SAK +  + + F ++A  +
Sbjct:   53 IILIGDQATGKSSVLQRFKNNQFEVCHKPSPIIIDCFTKKIQIEGKK-ISLKCYDTAGQEKFRALSQSYYRCADGIMLFYDIANQKTFDNVGRWLEEVHRLAGPNVPILIIANKCDLNEKRVVNFNNAKKFADDKNIPIIEVSAKESLGVEEAFIKLASEI 212          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB34_RAT (Ras-related protein Rab-34 OS=Rattus norvegicus GN=Rab34 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 45/161 (27.95%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 741
            K++++GD  VGK+C++ RF +  FD   K T+G  F  +   +        ++WDTAGQER+  +A  YYRG       +++    S   ++ W+ +  K   P ++++ LVG+K DL    +  +  +D ++ A++    +   S+ T +N+ + F  +A
Sbjct:   54 KVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDFEMERFEVL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHSKQWLADALKENDPSNVLLFLVGSKKDLSTPAQYSLMEKDALKVAQEIKAEYWSVSSLTGENVREFFFRVA 213          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB28_RAT (Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.037e-17
Identity = 50/171 (29.24%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  247 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            ++++ ++K+V+LGD   GK+ +   F +  F    K T+G  F  + I L  +  V  ++WD  GQ     +   Y  G       YDIT+  SF   + W   VK + +      ++ALVGNK DL   R V     + + ++NG      SAKT D++   F+++A  +
Sbjct:    7 ESQDRQLKIVVLGDGTSGKTSLATCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQVWDIGGQTIGGKMLDKYIYGAQGILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 177          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RASK_CYPCA (GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.273e-17
Identity = 61/187 (32.62%), Postives = 92/187 (49.20%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRLPRPSPSS*LWILKSELLCLLM 813
            KLV++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK DL   R V  +   + A   G+ FIETSAKT   ++  F     EI K   + S        KS+  C+LM
Sbjct:    5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PSRSVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKEGKKKKKKSKTKCVLM 188          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAC8_ARATH (Rac-like GTP-binding protein ARAC8 OS=Arabidopsis thaliana GN=ARAC8 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.273e-17
Identity = 58/178 (32.58%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  265 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPRPS 762
            +K V +GD  VGK+C+++ +   +F      TV  +F    +   +  TV   +WDTAGQE Y  L PL YRG       + + S  S+ N  + W+ ELQ H +P + + LVG K DL E R           V    G E  +  G  ++IE S+KT  N+  +F+   K + +P+
Sbjct:    9 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSVNVVV--EGITVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVFKKWIPELQ-HFAPGVPIVLVGTKMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKVVIKPA 183          
The following BLAST results are available for this feature:
BLAST of CK934466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2A_MOUSE4.037e-1735.09Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN4.037e-1735.09Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RAC6_ORYSJ4.037e-1731.64Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]
RAC5_ARATH4.037e-1731.64Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC2_LOTJA4.037e-1731.64Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RABZ_DICDI4.037e-1728.57Ras-related protein RabZ OS=Dictyostelium discoide... [more]
RAB34_RAT4.037e-1727.95Ras-related protein Rab-34 OS=Rattus norvegicus GN... [more]
RAB28_RAT4.037e-1729.24Ras-related protein Rab-28 OS=Rattus norvegicus GN... [more]
RASK_CYPCA5.273e-1732.62GTPase KRas OS=Cyprinus carpio GN=kras PE=2 SV=1[more]
RAC8_ARATH5.273e-1732.58Rac-like GTP-binding protein ARAC8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934466 ID=CK934466; Name=CK934466; organism=Citrus sinensis; type=EST; length=892bp
GGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAATC
AGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAATT
ACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATATTT
ATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGTTC
TGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGATG
CAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTGGG
AAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACCTC
CAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCAAG
ATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAAGA
TATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTTGT
TGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTGGG
TTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAGTT
GGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGATGG
CATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGCCA
AGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGACTT
CCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTGCT
GTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGATT
TGTGTATATTGTGATATATGATGTGGNNNNNTGTTTCATTTT
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