CK934466

Overview
NameCK934466
Unique NameCK934466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13179 contig Csv1_Contig13179:82..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 738
            K+VL+GDSGVGKS I+ RF R +F   SK T+G  F ++T+ ++  T VK +IWDTAGQERY A+   YYRG       YDIT   +F+  Q W++EL+ H   +IV+ + GNK+DL+  R V   DG   +EK G+ F+ETSA  A NI + F+ I
Sbjct:   14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKT-VKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTI 169          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 72/164 (43.90%), Postives = 105/164 (64.02%), Query Frame = 1
Query:  262 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 753
            + KLV LG+  VGK+ I+ RF+   FD T + T+G  FLS+T+ L+D T ++ ++WDTAGQER+ +L P Y R        YDIT+ +SF++   WV +++     D+++ LVGNK DL +KR+V  +DG + A    + FIETSAK   N+ QLF +IA  LP
Sbjct:   11 KFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALP 173          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.783e-34
Identity = 65/161 (40.37%), Postives = 106/161 (65.84%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            K +++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F   AK +
Sbjct:    8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB6B_MOUSE (Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.635e-34
Identity = 73/175 (41.71%), Postives = 110/175 (62.86%), Query Frame = 1
Query:  232 NAGSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 753
            +AG      LR  KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF +   W+ +++     D+++ LVGNK DL +KR++  ++G + A++  + FIETSAKT  N+ QLF  +A  LP
Sbjct:    2 SAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175          
The following BLAST results are available for this feature:
BLAST of CK934466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11C_LOTJA2.783e-3447.13Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RAB6A_CAEEL2.783e-3443.90Ras-related protein Rab-6.1 OS=Caenorhabditis eleg... [more]
RAB2A_RABIT2.783e-3440.37Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB2.783e-3440.37Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE2.783e-3440.37Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA2.783e-3440.37Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN2.783e-3440.37Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK2.783e-3440.37Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA2.783e-3440.37Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB6B_MOUSE3.635e-3441.71Ras-related protein Rab-6B OS=Mus musculus GN=Rab6... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934466 ID=CK934466; Name=CK934466; organism=Citrus sinensis; type=EST; length=892bp
GGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAATC
AGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAATT
ACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATATTT
ATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGTTC
TGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGATG
CAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTGGG
AAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACCTC
CAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCAAG
ATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAAGA
TATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTTGT
TGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTGGG
TTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAGTT
GGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGATGG
CATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGCCA
AGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGACTT
CCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTGCT
GTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGATT
TGTGTATATTGTGATATATGATGTGGNNNNNTGTTTCATTTT
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