CK934466

Overview
NameCK934466
Unique NameCK934466
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13179 contig Csv1_Contig13179:82..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.058e-33
Identity = 71/157 (45.22%), Postives = 101/157 (64.33%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 738
            K+VL+GDSGVGKS ++ RF R +F   SK T+G  F +++I + D  T+K +IWDTAGQERY A+   YYRG       YDIT   +F   + W+KEL+ H   +IV+ LVGNK+DL   R+V  +    + E+ G+ FIETSA  + N+ + F++I
Sbjct:   14 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQI 169          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.058e-33
Identity = 70/163 (42.94%), Postives = 102/163 (62.58%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 756
            K+VL+GDSGVGKS ++ RF R +F   SK T+G  F ++++ + D   VK +IWDTAGQERY A+   YYRG       YD+T   +F   + W+KEL+ H  P+IV+ LVGNK+DL     V   +G  +AE+  ++F+ETSA  + N+   F E+  ++ R
Sbjct:   16 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQV-DGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYR 177          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 70/165 (42.42%), Postives = 102/165 (61.82%), Query Frame = 1
Query:  256 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            +L +KL+L+GDSGVGKSC++LRF   QF P+   T+G  F  +TI + +   VK ++WDTAGQER+  +   YYRG       YD+T   SFN  + W + +Q + +  + + LVGNK DL EKR V  + G   A+K G+ F+E S+KT  N+ + F  +A R+
Sbjct:    9 DLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQR-VKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRI 172          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 72/163 (44.17%), Postives = 103/163 (63.19%), Query Frame = 1
Query:  265 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            +K++++G+SGVGKS ++LRF    FDP    T+G  F  +TIA+ D    K  IWDTAGQER+  L P YYRG       YD+T  D+F K + W+ EL+ + +  D+V  LVGNK D  + REV   +G+++A K+ M FIE SAKT D +   FEE+ +++
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAI-DGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKID-KDNREVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKI 169          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 74/157 (47.13%), Postives = 99/157 (63.06%), Query Frame = 1
Query:  268 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 738
            KLVL+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D   VK +IWDTAGQERY A+   YYRG       YDIT   +F   + W+KEL+ H   +IV+ LVGNKADL   R V  +D   +AE+   FF+ETSA  + N+   F E+
Sbjct:   16 KLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKI-VKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEV 171          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB6B_CAEEL (Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 70/164 (42.68%), Postives = 104/164 (63.41%), Query Frame = 1
Query:  262 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 753
            + KLV LG+  VGK+ ++ RF+   FD T + T+G  FLS+T+ L+D T V+ ++WDTAGQER+ +L P Y R        YDIT+ +SF++   W+ +++     D+++ LVGNK DL +KR+V   +G   A++  + FIETSAK   N+ QLF  IA  LP
Sbjct:   10 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNSNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVTTDEGERKAKELNVMFIETSAKAGYNVKQLFRRIAGALP 172          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 74/200 (37.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:  166 MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 765
            MGCS S     S  S   + +  + S    ++ +K++++GDSGVGKSC++LRF   +F  +   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YDITS DSFN  + W+ ++ +  SP ++  +VGNK DL+ KR V  +   ++A++  +  +ETSAK +  I++ F ++A  + + +P
Sbjct:    1 MGCSPSKEGNGSFSSTSTSFIHGSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIEL-DGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKKSTP 199          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: RAB17_MOUSE (Ras-related protein Rab-17 OS=Mus musculus GN=Rab17 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 76/176 (43.18%), Postives = 114/176 (64.77%), Query Frame = 1
Query:  226 LENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 750
            L  A ++  +    KLVLLG S VGK+ + LR+++  F      TVG +F ++ + L  S+++K EIWDTAGQE+Y ++  LY+RG       YDIT  DSF+KAQ W+++L+K   P ++V+ LVGNK DL E+REV  Q+G E+AE   + F+ETSAK    ++++F  +A+ L
Sbjct:    7 LPQASTASGQPYVSKLVLLGSSSVGKTSLALRYMKQDFSNVLP-TVGCAFFTKVLDL-GSSSLKLEIWDTAGQEKYQSVCHLYFRGANAALLVYDITRKDSFHKAQQWLEDLEKEFQPGEVVVMLVGNKTDLGEEREVTFQEGKEFAESKSLLFMETSAKLNYQVSEIFNTVAQEL 180          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.381e-33
Identity = 72/161 (44.72%), Postives = 101/161 (62.73%), Query Frame = 1
Query:  265 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 744
            +KL+L+GDSGVGKSC++LRF  G F  +   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YD+T   SFN  + W++ +++H S ++   LVGNKAD+ E KR VP   G   A++ G+ F ETSAKT  N+ ++F  I +
Sbjct:   16 IKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIGR 175          
BLAST of CK934466 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.804e-33
Identity = 65/161 (40.37%), Postives = 105/161 (65.22%), Query Frame = 1
Query:  256 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 738
            +L  K+VL+GDSGVGKS ++ RF + +F+  SK T+G  F ++T+ + D   +K +IWDTAGQERY A+   YYRG       YDI+   S+    +W+ EL+++   ++ + L+GNK+DL   R VP ++   +A++N + F ETSA  ++N+++ FEE+
Sbjct:   11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-DGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170          
The following BLAST results are available for this feature:
BLAST of CK934466 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPTC6_CHLRE1.058e-3345.22Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RIC2_ORYSJ1.058e-3342.94Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
RYL1_YARLI1.381e-3342.42Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RB18B_DANRE1.381e-3344.17Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]
RB11B_TOBAC1.381e-3347.13Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RAB6B_CAEEL1.381e-3342.68Ras-related protein Rab-6.2 OS=Caenorhabditis eleg... [more]
RAB1C_DICDI1.381e-3337.00Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB17_MOUSE1.381e-3343.18Ras-related protein Rab-17 OS=Mus musculus GN=Rab1... [more]
ARA3_ARATH1.381e-3344.72Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
YPT31_YEAST1.804e-3340.37GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_H04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934466 ID=CK934466; Name=CK934466; organism=Citrus sinensis; type=EST; length=892bp
GGGGGAGTTTCGGCCATTAACGACCAACATCCGAAGCACTGCAGCAAATC
AGCAATCAATCTGCTCATCGCAAAATCACTCCACTACTAATACCCTAATT
ACACATATACGTGCATACGCATACTTATATACATACTCGTTTATATATTT
ATTCTTACAGGTCGAATGGGTTGCTCAGGTTCTGTTCCAGCTAGGAGTTC
TGGCCAGTCCGGTGGACTTAACAACTTGGAAAATGCAGGGTCATCTGATG
CAAAAAACCTACGTGTTAAGCTGGTTCTGTTAGGTGATTCAGGTGTTGGG
AAAAGTTGTATTGTTCTTCGCTTTGTTCGTGGCCAGTTTGACCCTACCTC
CAAGGTAACTGTTGGAGCCTCATTCTTGTCACAGACGATAGCTTTGCAAG
ATTCTACAACAGTTAAGTTTGAAATATGGGATACAGCTGGTCAAGAAAGA
TATGCTGCTCTGGCACCACTATATTACAGAGGTGCTGCAGTCGCAGTTGT
TGTGTATGATATAACTAGTCCAGATTCATTCAACAAAGCGCAATACTGGG
TTAAGGAGCTACAAAAACATGGAAGTCCTGACATAGTCATGGCTTTAGTT
GGTAACAAGGCTGATCTTCATGAGAAGCGAGAAGTACCAGCTCAAGATGG
CATTGAGTATGCGGAGAAGAATGGGATGTTCTTTATCGAAACATCGGCCA
AGACTGCAGATAATATAAATCAGCTGTTTGAGGAAATTGCTAAGCGACTT
CCCCGCCCATCACCTTCTTCATGATTGTGGATTCTGAAATCTGAACTGCT
GTGTCTGCTGATGTAACGCCGAATCCTGTCAGTTTGTCATATCAAAGATT
TGTGTATATTGTGATATATGATGTGGNNNNNTGTTTCATTTT
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