CK934467

Overview
NameCK934467
Unique NameCK934467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12923 contig Csv1_Contig12923:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.524e-50
Identity = 94/178 (52.81%), Postives = 122/178 (68.54%), Query Frame = 3
Query:  180 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAN 713
            +G II+R MF+ +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC ++E++P     DP       Y GRGPIQL+  YNY              NNPDL+++DPV++F++AIWFWMTAQ PKPSCH+VI ++W PS +
Sbjct:   27 VGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITP----SDP------PYYGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGD 191          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.231e-49
Identity = 93/175 (53.14%), Postives = 119/175 (68.00%), Query Frame = 3
Query:  183 GKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 707
            G I++RE+F+ +L +RN++ CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYCF+ ++    D  D       +Y GRGPIQL+   NY R            NNPDL+ATDP++SF++AIWFWMTAQ  KPSCH VII +W PS
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQI----DQSD-------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPS 187          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.607e-49
Identity = 91/175 (52.00%), Postives = 116/175 (66.29%), Query Frame = 3
Query:  183 GKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPS 707
            G I++RE+F+ +L +RN++ CPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HET GG      G +  GYCF+ ++               +Y GRGPIQL+   NY R            NNPDL+ATDP++SFK+AIWFWMT Q  KPSCH VII +W PS
Sbjct:   28 GSIVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQIEQSD-----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPS 187          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.607e-49
Identity = 97/185 (52.43%), Postives = 118/185 (63.78%), Query Frame = 3
Query:  180 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS--DYCDPN--YPCRG--KYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAN 713
            +  I+SR +FD +L +RND  CPA  FYTYDAF+ AA AFPGF  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E    +  DYC  +  +PC    KY GRGPIQLS+N+NY               +PDL+A+D  +SF +A WFWMT Q PKPSCH V   +W PSA+
Sbjct:   81 VASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSAD 263          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.819e-48
Identity = 87/176 (49.43%), Postives = 114/176 (64.77%), Query Frame = 3
Query:  195 SREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDP----NYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPS 707
            +  MF+ +L  RN++ CP +GFYTYDA+  A + +PGFG +G++  RKRE+AAFFAQT  ET+G         + WGYC ++E++P SDYCDP    +YPC   Y GRGP+QL WNYNY  C           + P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPS 241          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.466e-47
Identity = 96/178 (53.93%), Postives = 121/178 (67.98%), Query Frame = 3
Query:  177 ELGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSA 710
            ++G I++ ++F+++L+ RND+RCPA+GFYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF+ E          N    G Y GRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVRE---------GNQMGSGFY-GRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSA 182          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.988e-45
Identity = 92/177 (51.98%), Postives = 117/177 (66.10%), Query Frame = 3
Query:  180 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSA 710
            +G I++ ++F+++L+ RND RCPA GFYTYDAFI AA +FPGFG SG++T R++EIAAFF QT HETTGG   A    +  GYCF+ +    +D  D       +Y GRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNQNNYEKA--GNAIRQDLVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSA 188          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.988e-45
Identity = 83/181 (45.86%), Postives = 115/181 (63.54%), Query Frame = 3
Query:  180 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCD------PNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKP 704
            +  I+S +++  L  +++D  CPARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG C+  E++P S YCD      P YP +  Y GRGPIQ+SWN+NY               NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGK-SYHGRGPIQISWNFNY--GPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRP 226          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.033e-44
Identity = 93/177 (52.54%), Postives = 114/177 (64.41%), Query Frame = 3
Query:  180 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSA 710
            +G I++ ++FD +L+ RND RC A  FYTYDAFI AA +FPGFG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF+ E +   +           Y GRGPIQL+   NY              NNPDL+ATD  +SFK+AIWFWMT Q  KPSCH+VI   W PSA
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGN----------GYYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSA 189          
BLAST of CK934467 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.033e-44
Identity = 91/177 (51.41%), Postives = 117/177 (66.10%), Query Frame = 3
Query:  180 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPSDYCDPNYPCRGKYCGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSA 710
            +G I++ ++F+++L+ RND RCPA GFYTYDAFI AA +FPGFG +G++T R++EIAAFF QT HETTGG   A    +  GYCF+ +    +D  D       +Y GRGPIQL+   NY +            NNPDL+ATD  +SFK+AIWFWMT Q  KPS H+VII  W PSA
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAE--PFTGGYCFVRQ----NDQSD-------RYYGRGPIQLTNRNNYEKA--GTAIGQELVNNPDLVATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSA 188          
The following BLAST results are available for this feature:
BLAST of CK934467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI11_ORYSJ5.524e-5052.81Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI1.231e-4953.14Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC1.607e-4952.00Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI12_ORYSJ1.607e-4952.43Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR8.819e-4849.43Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIB_SOLLC7.466e-4753.93Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC6.988e-4551.98Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI10_ORYSJ6.988e-4545.86Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY2.033e-4452.54Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIQ_TOBAC2.033e-4451.41Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_F10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934467 ID=CK934467; Name=CK934467; organism=Citrus sinensis; type=EST; length=715bp
GGGGGAACCAAGCAGAGGATAATTGATATCATAACTNNNNCTTTCAAATG
AGGCTTATTGGGTCCTTACTAATTTTCTCTCTAGTTTTATCTTTTGTACT
AGGAGGCTCAGCACAGAACTGTGGAAGCGGCGTTGTGTACGGTGGACGTG
ATACCGGCCATGGGACGCATGGCGGTGAACTGGGCAAGATCATCTCAAGG
GAGATGTTTGATGACTTGCTTGAGTATAGAAATGATGAACGATGCCCTGC
CAGAGGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTC
CAGGCTTTGGTAACTCTGGAAATGAAACCATGCGTAAAAGAGAAATCGCT
GCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGATGC
ACCTGGTGGCGAATATGCTTGGGGATATTGCTTTATAAGCGAAGTTAGCC
CTCCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGTACTGT
GGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTACTTACGGTGCGG
AGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTG
CTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACT
GCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAA
ACCATCAGCAAATGA
back to top