CK934471

Overview
NameCK934471
Unique NameCK934471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5544 contig Csv1_Contig5544:58..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_STRIE (Calmodulin OS=Strongylocentrotus intermedius PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 62/153 (40.52%), Postives = 91/153 (59.48%), Query Frame = 1
Query:   73 TTEADSNRKQLIVSPEEMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            T  AD   ++ I    E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:    6 TINADQLTEEQIA---EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 155          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_BLAEM (Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE=3 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 5.943e-23
Identity = 57/135 (42.22%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 522
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL+ ++ ++D D +G I   EF T+  R    +  E E++EAF ++D+D NG ISA EL  V+  LG K S D    MI+  D DGDG +N+EEF  MM
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELLVMINEVDADGNGTIDFPEFLTMMARKMKDSDSEEEIKEAFKVFDKDGNGYISAAELRHVMTNLGEKLSEDEVEEMIREADVDGDGQINYEEFVKMM 146          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_PATSP (Calmodulin OS=Patinopecten sp. PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D DG I   EF T+  R       E E+REAF ++D+D +G ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_OREMO (Calmodulin OS=Oreochromis mossambicus GN=calm PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/136 (42.65%), Postives = 83/136 (61.03%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 525
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF  MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRYVMTNLGEKLTDEXVDEMIREADIDGDGQVNYEEFVQMMT 147          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_LOCMI (Calmodulin OS=Locusta migratoria PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_DROME (Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_CIOIN (Calmodulin OS=Ciona intestinalis PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/136 (42.65%), Postives = 84/136 (61.76%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMT 525
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQVNYEEFVNMMT 147          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_APLCA (Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALMA_HALRO (Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM1_BRALA (Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 58/137 (42.34%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  121 EMQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETI-CRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            E ++ F+ FD++ DG I+  EL TV++S+G +  E EL  ++ ++D D +G I   EF T+  R       E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 148          
The following BLAST results are available for this feature:
BLAST of CK934471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
CALM_STRIE5.943e-2340.52Calmodulin OS=Strongylocentrotus intermedius PE=2 ... [more]
CALM_BLAEM5.943e-2342.22Calmodulin OS=Blastocladiella emersonii GN=CMD1 PE... [more]
CALM_PATSP7.762e-2342.34Calmodulin OS=Patinopecten sp. PE=1 SV=2[more]
CALM_OREMO7.762e-2342.65Calmodulin OS=Oreochromis mossambicus GN=calm PE=2... [more]
CALM_LOCMI7.762e-2342.34Calmodulin OS=Locusta migratoria PE=1 SV=2[more]
CALM_DROME7.762e-2342.34Calmodulin OS=Drosophila melanogaster GN=Cam PE=1 ... [more]
CALM_CIOIN7.762e-2342.65Calmodulin OS=Ciona intestinalis PE=2 SV=3[more]
CALM_APLCA7.762e-2342.34Calmodulin OS=Aplysia californica GN=CAM PE=2 SV=2[more]
CALMA_HALRO7.762e-2342.34Calmodulin-A OS=Halocynthia roretzi PE=1 SV=2[more]
CALM1_BRALA7.762e-2342.34Calmodulin-1 OS=Branchiostoma lanceolatum PE=2 SV=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_G02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934471 ID=CK934471; Name=CK934471; organism=Citrus sinensis; type=EST; length=725bp
GGGGATACCGTGGTCTCTTAAATTATCTTTTCCCCCAAACAGAACTAAAG
AAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAAAC
AGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCGAC
GAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTGAA
ATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGAGG
ATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCGGAGTTCGAAACG
ATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAGGC
GTTTGGTCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGAGT
TGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGATGT
GTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAATTT
TGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGCGC
CGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATATCA
ACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGTCT
ACTACTTTTAATGTTAATAAACTCCGATGCATTTTCAATGGTTTACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
back to top