CK934471

Overview
NameCK934471
Unique NameCK934471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5544 contig Csv1_Contig5544:58..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: TNNC1_MOUSE (Troponin C, slow skeletal and cardiac muscles OS=Mus musculus GN=Tnnc1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  157 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 522
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKMMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: TNNC1_HUMAN (Troponin C, slow skeletal and cardiac muscles OS=Homo sapiens GN=TNNC1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 36/126 (28.57%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  157 KDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETIC----RTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 522
            +DG IS  EL  V++ +G +   EEL  +++++D D  G +   EF  +     +  S    E EL + F ++D++ +G I  +EL ++L   G   + D    ++K  D + DG ++++EF   M
Sbjct:   32 EDGCISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRCMKDDSKGKSEEELSDLFRMFDKNADGYIDLDELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYDEFLEFM 157          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CML27_ORYSJ (Probable calcium-binding protein CML27 OS=Oryza sativa subsp. japonica GN=CML27 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 46/151 (30.46%), Postives = 74/151 (49.01%), Query Frame = 1
Query:  124 MQKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAA----------------GEAELREAFGLYDQDKNGLISAEELNLVLNRLGI--KCSVDGCVAMIKPVDADGDGNVNFEEFRSMM 522
            ++++F+ FD N DG+I+L E+A+ L ++G       L   +          +   +FE + R    A                  E +++EAF ++D+D +G ISA EL  VL +LG+    ++     MI  VD D DG V+F EF+ MM
Sbjct:   32 LRRVFDLFDRNGDGEITLDEMASALDALGLGADRAGLEATVGGYIPAGAAGLRFGDFEALHRALGDALFGPVEEEEPGKQGEDDDEGDMKEAFRVFDEDGDGFISAAELQAVLKKLGLPEARNLATVQEMICNVDRDCDGRVDFGEFKCMM 182          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CDPKX_ARATH (Calcium-dependent protein kinase 33 OS=Arabidopsis thaliana GN=CPK33 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = 1
Query:  109 VSPEEMQKI---FNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICRTSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCV-AMIKPVDADGDGNVNFEEFRSMM 522
            +  EE+Q +   F   D +  G I+  EL   L  +GS   E E+ ++M+  D D +G I   EF T             + +AF  +D+D +G I+ +EL   L   G+    D  +  ++  VDAD DG +N++EF +MM
Sbjct:  371 IDTEEIQGLKAMFANIDTDNSGTITYEELKEGLAKLGSRLTEAEVKQLMDAADVDGNGSIDYIEFITATMHRHRLESNENVYKAFQHFDKDGSGYITTDELEAALKEYGM--GDDATIKEILSDVDADNDGRINYDEFCAMM 510          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: CALM_STRPU (Calmodulin (Fragment) OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  331 EAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 528
            E E+REAF ++D+D NG ISA EL  V+  LG K + +    MI+  D DGDG VN+EEF +MMT+
Sbjct:   14 EEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVAMMTS 79          
BLAST of CK934471 vs. ExPASy Swiss-Prot
Match: LPS1B_LYTPI (Calcium-binding protein LPS1-beta (Fragment) OS=Lytechinus pictus PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 43/138 (31.16%), Postives = 66/138 (47.83%), Query Frame = 1
Query:  127 QKIFNQFDENKDGKISLTELATVLKSMGSSYKEEELVRVMEDLDTDKDGFISLSEFETICR--TSSGAAGEAELREAFGLYDQDKNGLISAEELNLVLNRLGIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTSL 534
            Q+  + +D NKDG +S  ELA ++        EEE  R++  +D + DG +   EF       T        E+++ F   D+D NG IS +EL+  +  +  K        +I+  D DGDG+VN EEF   +   L
Sbjct:   22 QEFKDNYDTNKDGTVSCAELAKLMDC-----PEEEAQRIITGVDVNCDGRMQFDEFLLYMEGYTKERLYSSDEIKQMFDDLDKDGNGRISPDELSKGVGEISTKLVEGMANKLIQEADKDGDGHVNMEEFVDTLVAKL 154          
The following BLAST results are available for this feature:
BLAST of CK934471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 316
Match NameE-valueIdentityDescription
TNNC1_MOUSE5.219e-1128.57Troponin C, slow skeletal and cardiac muscles OS=M... [more]
TNNC1_HUMAN5.219e-1128.57Troponin C, slow skeletal and cardiac muscles OS=H... [more]
CML27_ORYSJ5.219e-1130.46Probable calcium-binding protein CML27 OS=Oryza sa... [more]
CDPKX_ARATH5.219e-1130.99Calcium-dependent protein kinase 33 OS=Arabidopsis... [more]
CALM_STRPU5.219e-1151.52Calmodulin (Fragment) OS=Strongylocentrotus purpur... [more]
LPS1B_LYTPI8.902e-1131.16Calcium-binding protein LPS1-beta (Fragment) OS=Ly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_G02 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934471 ID=CK934471; Name=CK934471; organism=Citrus sinensis; type=EST; length=725bp
GGGGATACCGTGGTCTCTTAAATTATCTTTTCCCCCAAACAGAACTAAAG
AAAAAGAAAAGCAATGGCAGCAACGACGGAGGCAGATTCGAATAGGAAAC
AGCTAATAGTGAGCCCGGAGGAGATGCAGAAGATCTTCAACCAGTTCGAC
GAGAACAAGGACGGCAAGATCTCGCTGACGGAGCTGGCGACCGTTTTGAA
ATCAATGGGATCGAGCTACAAAGAGGAGGAGCTCGTCCGCGTCATGGAGG
ATCTCGATACCGACAAGGACGGATTCATCAGCCTGTCGGAGTTCGAAACG
ATCTGCCGGACCTCCTCTGGTGCCGCCGGCGAGGCCGAGCTCCGCGAGGC
GTTTGGTCTCTACGATCAGGACAAGAACGGTTTGATTTCGGCGGAGGAGT
TGAATTTGGTGTTGAACAGGCTCGGAATTAAGTGCTCGGTTGATGGATGT
GTGGCGATGATTAAGCCGGTGGATGCCGATGGTGATGGCAATGTGAATTT
TGAAGAGTTTCGTTCGATGATGACTACTTCTCTTAAACCTGGTCCTGCGC
CGTAGATTTTGGTTTCGACGGTGATTCGATGGTCGGCCGTACCGATATCA
ACTTGCGTCCGTTTATAGGCTGTCGTTTTCCTCCGTGCCTACTTGTGTCT
ACTACTTTTAATGTTAATAAACTCCGATGCATTTTCAATGGTTTACAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
back to top