CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934472_ssr555 microsatellite CK934472_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:433..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 2.079e-21
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251

HSP 2 Score: 46.595 bits (109), Expect = 2.079e-21
Identity = 38/103 (36.89%), Postives = 50/103 (48.54%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW ++V+++G +E  R         +DP   LYPGG F
Sbjct:   95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGAF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.081e-21
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476
            FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP
Sbjct:  185 FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADP 240

HSP 2 Score: 50.0618 bits (118), Expect = 2.081e-21
Identity = 39/107 (36.45%), Postives = 53/107 (49.53%), Query Frame = 2 
Query:   41 QRFRECELIHGRWAMLATLGALTVEWLT---GI-----TWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            +++RE E+IH RWA+L  LG LT E L+   G+      W  AG     EG   YLG P      +I   + ++V+++G IE  R         LDP   LYPG  F
Sbjct:   82 KKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDP---LYPGESF 185
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.704e-21
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HLSDP++
Sbjct:  197 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254

HSP 2 Score: 45.8246 bits (107), Expect = 2.704e-21
Identity = 38/103 (36.89%), Postives = 50/103 (48.54%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   98 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF 197
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.705e-21
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253

HSP 2 Score: 46.9802 bits (110), Expect = 2.705e-21
Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR---NSEL-DPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      ++  IW  +V+++G +E  R   N  L + E  LYPGG F
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.705e-21
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  196 FDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 253

HSP 2 Score: 46.9802 bits (110), Expect = 2.705e-21
Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR---NSEL-DPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L   G+      W  AG     +G   YLG P      ++  IW  +V+++G +E  R   N  L + E  LYPGG F
Sbjct:   94 RNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.953e-21
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  198 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 255

HSP 2 Score: 45.8246 bits (107), Expect = 5.953e-21
Identity = 38/103 (36.89%), Postives = 50/103 (48.54%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   99 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF 198
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.747e-21
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251

HSP 2 Score: 44.2838 bits (103), Expect = 7.747e-21
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP---LYPGGSF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.749e-21
Identity = 35/57 (61.40%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A H++DP+
Sbjct:  193 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPV 249

HSP 2 Score: 46.595 bits (109), Expect = 7.749e-21
Identity = 40/103 (38.83%), Postives = 50/103 (48.54%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G IE  R         LDP   LYPGG F
Sbjct:   94 RELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDP---LYPGGAF 193
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.007e-20
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL+DP+
Sbjct:  197 FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPV 253

HSP 2 Score: 48.1358 bits (113), Expect = 1.007e-20
Identity = 40/105 (38.10%), Postives = 51/105 (48.57%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG LT E L  +G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R          DP   +YPGG F
Sbjct:   96 RNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVTDP---IYPGGSF 197
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2B_SOLLC (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum GN=CAB1B PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.008e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251

HSP 2 Score: 43.8986 bits (102), Expect = 1.008e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   95 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF 194
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB21_ORYSJ2.079e-2163.79Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2_CHLMO2.081e-2162.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB28_PEA2.704e-2163.79Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH2.705e-2160.34Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.705e-2160.34Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB22_PEA5.953e-2162.07Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB22_TOBAC7.747e-2163.79Chlorophyll a-b binding protein 21, chloroplastic ... [more]
CB21_LEMGI7.749e-2161.40Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_PHYPA1.007e-2061.40Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2B_SOLLC1.008e-2063.79Chlorophyll a-b binding protein 1B, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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