CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934472_ssr555 microsatellite CK934472_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:433..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.008e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

HSP 2 Score: 43.8986 bits (102), Expect = 1.008e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.008e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  195 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252

HSP 2 Score: 43.8986 bits (102), Expect = 1.008e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF 195
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.008e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

HSP 2 Score: 44.2838 bits (103), Expect = 1.008e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.008e-20
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N + HL+DP
Sbjct:  194 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADP 249

HSP 2 Score: 47.7506 bits (112), Expect = 1.008e-20
Identity = 37/100 (37.00%), Postives = 49/100 (49.00%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR---NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +T E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R       + E  +YPGG F
Sbjct:   95 RELEVIHSRWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVEDPIYPGGSF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.008e-20
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  191 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 248

HSP 2 Score: 45.8246 bits (107), Expect = 1.008e-20
Identity = 38/103 (36.89%), Postives = 50/103 (48.54%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   92 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF 191
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.311e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

HSP 2 Score: 43.8986 bits (102), Expect = 1.311e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.311e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

HSP 2 Score: 43.8986 bits (102), Expect = 1.311e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.312e-20
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  185 FDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 242

HSP 2 Score: 44.2838 bits (103), Expect = 1.312e-20
Identity = 37/103 (35.92%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R          DP   +YPGG F
Sbjct:   86 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF 185
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.705e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  195 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVN 252

HSP 2 Score: 43.8986 bits (102), Expect = 1.705e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGEPLGEVVDP---LYPGGSF 195
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.705e-20
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A +++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  194 FDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251

HSP 2 Score: 45.4394 bits (106), Expect = 1.705e-20
Identity = 39/103 (37.86%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G IE  R         +DP   LYPGG F
Sbjct:   95 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVVDP---LYPGGTF 194
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB24_TOBAC1.008e-2063.79Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB21_TOBAC1.008e-2063.79Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2A_SPIOL1.008e-2063.79Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_POLMU1.008e-2060.71Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_MAIZE1.008e-2060.34Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC1.311e-2063.79Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB25_PETSP1.311e-2063.79Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB22_SOYBN1.312e-2062.07Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB25_NICPL1.705e-2063.79Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB29_MAIZE1.705e-2060.34Chlorophyll a-b binding protein M9, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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