CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934472_ssr555 microsatellite CK934472_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:433..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.711e-20
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N + H++DP+
Sbjct:  166 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPV 222

HSP 2 Score: 46.595 bits (109), Expect = 1.711e-20
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT--GIT-----WQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L+  G+T     W  AG     EG   YLG P      +++ I   +V+++G++E  R         LD   ++YPGG F
Sbjct:   65 RNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGGGPLGEGLD---KIYPGGAF 166
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.218e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

HSP 2 Score: 42.743 bits (99), Expect = 2.218e-20
Identity = 38/103 (36.89%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E     GI      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELFARNGIKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.221e-20
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ E+K+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  184 FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 241

HSP 2 Score: 43.8986 bits (102), Expect = 2.221e-20
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R          DP   +YPGG F
Sbjct:   85 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDP---IYPGGSF 184
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.885e-20
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  195 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 252

HSP 2 Score: 42.743 bits (99), Expect = 2.885e-20
Identity = 37/103 (35.92%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E     G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP---LYPGGSF 195
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.748e-20
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DP+  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  207 FDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 264

HSP 2 Score: 44.2838 bits (103), Expect = 3.748e-20
Identity = 38/103 (36.89%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G IE  R          DP   +YPGG F
Sbjct:  108 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP---IYPGGNF 207
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.753e-20
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL+N   HL+DP++
Sbjct:  196 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253

HSP 2 Score: 43.5134 bits (101), Expect = 3.753e-20
Identity = 39/103 (37.86%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G IE  R          DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.753e-20
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++  IK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  196 FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 253

HSP 2 Score: 43.8986 bits (102), Expect = 3.753e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   97 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF 196
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.753e-20
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  194 FDPLGLADDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250

HSP 2 Score: 48.521 bits (114), Expect = 3.753e-20
Identity = 40/105 (38.10%), Postives = 50/105 (47.62%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG    E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G++E  R         LDP   LYPGG F
Sbjct:   93 RNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGGGPLGEGLDP---LYPGGAF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.754e-20
Identity = 36/58 (62.07%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA D E  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  193 FDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 250

HSP 2 Score: 45.4394 bits (106), Expect = 3.754e-20
Identity = 38/103 (36.89%), Postives = 49/103 (47.57%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IHGRWAML  LG +  E L   G+      W   G     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   94 RELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP---LYPGGSF 193
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.877e-20
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  203 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVN 260

HSP 2 Score: 42.3578 bits (98), Expect = 4.877e-20
Identity = 37/103 (35.92%), Postives = 48/103 (46.60%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R          DP   +YPGG F
Sbjct:  104 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF 203
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB25_SOLLC1.711e-2059.65Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB23_PETSP2.218e-2063.79Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_CUCSA2.221e-2062.07Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_PETSP2.885e-2063.79Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB2A_PINSY3.748e-2060.34Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB27_TOBAC3.753e-2062.07Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC3.753e-2062.07Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB215_PEA3.753e-2056.14Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB22_HORVU3.754e-2062.07Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY4.877e-2062.07Chlorophyll a-b binding protein type 2 member 1B, ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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