CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934472_ssr555 microsatellite CK934472_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:433..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.364e-19
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  192 FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248

HSP 2 Score: 46.2098 bits (108), Expect = 2.364e-19
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF 192
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.364e-19
Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DP+  A L++ E+K+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  192 FDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 248

HSP 2 Score: 46.2098 bits (108), Expect = 2.364e-19
Identity = 38/105 (36.19%), Postives = 53/105 (50.48%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW ++V+++G++E  R         LD   ++YPGG F
Sbjct:   91 RNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLD---KVYPGGAF 192
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.366e-19
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476
            FDPLGLA DP+  A L++ EIK+ RLA  +  GF VQA+VTGKGP+ N   HL++P
Sbjct:  182 FDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANP 237

HSP 2 Score: 49.2914 bits (116), Expect = 2.366e-19
Identity = 40/106 (37.74%), Postives = 48/106 (45.28%), Query Frame = 2 
Query:   41 QRFRECELIHGRWAMLATLGALTVEWLT-------GITWQDAGKVELVEGS-SYLGQPL---PFSITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            +R+RE ELIH RWAML  LG  T E L           W  AG     EG   YLG P      +I     ++V+++G IE  R         LDP   LYPG  F
Sbjct:   80 KRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDP---LYPGESF 182
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.374e-19
Identity = 34/58 (58.62%), Postives = 43/58 (74.14%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA  PE  A L++ E+K+ RLAM +  GF V A+VTGKGPL N A HL+DP++
Sbjct:  157 FDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVN 214

HSP 2 Score: 45.8246 bits (107), Expect = 2.374e-19
Identity = 38/103 (36.89%), Postives = 50/103 (48.54%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   58 RELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP---LYPGGSF 157
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.194e-19
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476
            FDPLGLA DP+  A L++ EIK+ RLAM A LGF VQA+VTGKGP+ N   HL++P
Sbjct:  203 FDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANP 258

HSP 2 Score: 42.743 bits (99), Expect = 5.194e-19
Identity = 35/108 (32.41%), Postives = 49/108 (45.37%), Query Frame = 2 
Query:   41 QRFRECELIHGRWAMLATLGALTVEWLT---------GITWQDAGKVELVEGS-SYLGQPLPF---SITTLIWIEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            +R+RE ELIH R  +L  LG +T E L             W  AG     +G  +YLG P      +I   + ++V+++G +E  R         LDP   LYPG  F
Sbjct:   99 KRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDP---LYPGEAF 203
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.197e-19
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   H++DP+
Sbjct:  194 FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPV 250

HSP 2 Score: 43.1282 bits (100), Expect = 5.197e-19
Identity = 37/105 (35.24%), Postives = 51/105 (48.57%), Query Frame = 2 
Query:   44 RFRECELIHGRWAMLATLGALTVEWLT--GI-----TWQDAGKVELVEGS-SYLGQPLPFSITTLIWI---EVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            R RE E+IH RWAML  LG +  E L+  G+      W  AG     EG   YLG P      +++ +   +V+++G IE  R         LD   ++YPGG F
Sbjct:   93 RNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGPLGEGLD---KIYPGGAF 194
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.775e-19
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPL LA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL++P++
Sbjct:  174 FDPLALADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231

HSP 2 Score: 41.9726 bits (97), Expect = 6.775e-19
Identity = 39/103 (37.86%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLG-QPLPFSITTL-IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+     +W  AG     EG   YLG Q L  + + L IW  +V+++G +E  R          DP   +YPGG F
Sbjct:   75 RELEVIHSRWAMLGALGCVFPELLARNGVKFGEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP---IYPGGSF 174
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.486e-18
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA  P+  A L++ EIK+ RLAM +  GF VQA+VTGKGPL + A H++DP++
Sbjct:  195 FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252

HSP 2 Score: 43.5134 bits (101), Expect = 1.486e-18
Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGITWQDAG------KVELVEGSSYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L   G+ + +AG      ++    G  YLG P      +L  IW  +V+++G +E  R         +DP   LYPGG F
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGPLGEIVDP---LYPGGSF 195
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.513e-18
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:  195 FDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 251

HSP 2 Score: 39.6614 bits (91), Expect = 2.513e-18
Identity = 37/103 (35.92%), Postives = 45/103 (43.69%), Query Frame = 2 
Query:   50 RECELIHGRWAMLATLGALTVEWLT-------GITWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIEFQR------NSELDPEKRLYPGGKF 307
            RE E+IH RWAML  LG +  E L           W  AG     EG   Y G P      ++  IW  +V+++G IE  R         LDP   L PGG F
Sbjct:   96 RELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAF 195
[Close]
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 4.520e-17
Identity = 35/65 (53.85%), Postives = 40/65 (61.54%), Query Frame = 3 
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 503
            F+PL  A   E K      E+ + RLAM+AFLGF VQ  VTGKGP  N   HLSDP H TI+ TF
Sbjct:  190 FNPLNFAPTQEAKEK----ELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250

HSP 2 Score: 43.5134 bits (101), Expect = 4.520e-17
Identity = 29/80 (36.25%), Postives = 38/80 (47.50%), Query Frame = 2 
Query:   38 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR 259
            L+ F + EL++GRWAML   G L  E  T I       W DAGK +    SS           TL  IE ++  Y+E +R
Sbjct:   89 LKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSS-----------TLFVIEFILFHYVEIRR 157
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB23_ORYSJ2.364e-1956.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI2.364e-1956.14Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLRE2.366e-1957.14Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PEA2.374e-1958.62Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNSA5.194e-1962.50Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_TOBAC5.197e-1959.65Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_SOYBN6.775e-1960.34Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_WHEAT1.486e-1856.90Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.513e-1861.40Chlorophyll a-b binding protein type I, chloroplas... [more]
CB24_ARATH4.520e-1753.85Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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