CK934472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.178e-16 Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGL DPE+ A L++ EIK+ RLAM + GF VQA+VTGKGP+ N A HL+DP++ Sbjct: 193 FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250 HSP 2 Score: 30.8018 bits (68), Expect = 2.178e-16 Identity = 33/103 (32.04%), Postives = 47/103 (45.63%), Query Frame = 2 Query: 50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIE------FQRNSELDPEKRLYPGGKF 307 RE E+IH RWA+ LG + E L G+ W AG EG S+ G P ++ IW +V+++G +E + +DP LY GG F Sbjct: 94 RELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF 193
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 4.786e-16 Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 2 Query: 38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFF 310 L+ +RE ELIHGRWAMLA LG + TGI W +AG + G PFS TL+ ++L++G++E +R + DP+ + YPGGKFF Sbjct: 98 LKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFF 203 HSP 2 Score: 43.1282 bits (100), Expect = 4.786e-16 Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 3 Query: 306 FFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 446 FFDPL LA D +K L+LAEIKHARLAM+A L F +A GK PL Sbjct: 202 FFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.777e-15 Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 500 F+PL A E K EI + RLAM+AFLGF +Q VTGKGP +N H+SDP H TI+ T Sbjct: 189 FNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248 HSP 2 Score: 41.5874 bits (96), Expect = 1.777e-15 Identity = 29/80 (36.25%), Postives = 37/80 (46.25%), Query Frame = 2 Query: 38 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR 259 L+ F + EL++GRWAML G L E T I W AGK E SS TL IE ++ Y+E +R Sbjct: 88 LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRR 156
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 6.573e-15 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 3 Query: 306 FFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 503 +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 201 WFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267 HSP 2 Score: 42.743 bits (99), Expect = 6.573e-15 Identity = 35/115 (30.43%), Postives = 49/115 (42.61%), Query Frame = 2 Query: 53 ECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFF*SSGLG 328 + EL+H RWAML G E+LT I +W AG+ E + TTL IE+++IG+ E +R N++L YPGG +F G G Sbjct: 105 QAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 1.112e-14 Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 2 Query: 38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFF 310 L+ +RE ELIHGRWAM A LG + +GI W +AG + G PFS TL+ +++++G++E +R + DP+ + YPGGKFF Sbjct: 93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFF 198 HSP 2 Score: 43.1282 bits (100), Expect = 1.112e-14 Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 3 Query: 306 FFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 446 FFDPL LA D EK L++AEIKHARLAM+A L F +A GK PL Sbjct: 197 FFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.433e-14 Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 3 Query: 306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 494 FF+PLG D + L+L E+K+ RLAM+A LG+ +Q +VTG GP N H++DP++ +L Sbjct: 207 FFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVL 269 HSP 2 Score: 35.4242 bits (80), Expect = 2.433e-14 Identity = 32/119 (26.89%), Postives = 49/119 (41.18%), Query Frame = 2 Query: 59 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFF*SSGLGR 331 E+I+GR+AML +GA+ E+L T + W G + +Y TL +E+ ++G+ E +R + L EK YPGG FF G G+ Sbjct: 102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK 215
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.435e-14 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 3 Query: 306 FFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 503 +FDPLG + P K L+ EIK+ RLAM+A +G Q + TG GP++N HL+DP H TI F Sbjct: 201 WFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267 HSP 2 Score: 40.817 bits (94), Expect = 2.435e-14 Identity = 37/130 (28.46%), Postives = 55/130 (42.31%), Query Frame = 2 Query: 8 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFF*SSGLG 328 PL ++ L+ ++ EL+H RWAML G E LT I +W AG+ E + TTL +E+++IG+ E +R N++L YPGG +F G G Sbjct: 90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 45 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14 Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251 The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bpback to top |