CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934472_ssr555 microsatellite CK934472_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:433..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.178e-16
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGL  DPE+ A L++ EIK+ RLAM +  GF VQA+VTGKGP+ N A HL+DP++
Sbjct:  193 FDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250          

HSP 2 Score: 30.8018 bits (68), Expect = 2.178e-16
Identity = 33/103 (32.04%), Postives = 47/103 (45.63%), Query Frame = 2
Query:   50 RECELIHGRWAMLATLGALTVEWL--TGI-----TWQDAGKVELVEGS-SYLGQPLPFSITTL--IW-IEVLVIGYIE------FQRNSELDPEKRLYPGGKF 307
            RE E+IH RWA+   LG +  E L   G+      W  AG     EG  S+ G P      ++  IW  +V+++G +E       +    +DP   LY GG F
Sbjct:   94 RELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDP---LYLGGSF 193          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 4.786e-16
Identity = 41/114 (35.96%), Postives = 57/114 (50.00%), Query Frame = 2
Query:   38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFF 310
            L+ +RE ELIHGRWAMLA LG    +  TGI W +AG        +  G   PFS  TL+  ++L++G++E +R  +  DP+ +                       YPGGKFF
Sbjct:   98 LKWYREAELIHGRWAMLAVLGIFVGQAWTGIPWFEAG--------ADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFF 203          

HSP 2 Score: 43.1282 bits (100), Expect = 4.786e-16
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 3
Query:  306 FFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 446
            FFDPL LA          D +K   L+LAEIKHARLAM+A L F  +A   GK PL
Sbjct:  202 FFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 1.777e-15
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDT 500
            F+PL  A   E K      EI + RLAM+AFLGF +Q  VTGKGP +N   H+SDP H TI+ T
Sbjct:  189 FNPLNFAPTLEAKEK----EIANGRLAMLAFLGFIIQHNVTGKGPFDNLLQHISDPWHNTIVQT 248          

HSP 2 Score: 41.5874 bits (96), Expect = 1.777e-15
Identity = 29/80 (36.25%), Postives = 37/80 (46.25%), Query Frame = 2
Query:   38 LQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR 259
            L+ F + EL++GRWAML   G L  E  T I       W  AGK E    SS           TL  IE ++  Y+E +R
Sbjct:   88 LRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSS-----------TLFVIEFILSHYVEIRR 156          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 6.573e-15
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 3
Query:  306 FFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 503
            +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:  201 WFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          

HSP 2 Score: 42.743 bits (99), Expect = 6.573e-15
Identity = 35/115 (30.43%), Postives = 49/115 (42.61%), Query Frame = 2
Query:   53 ECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFF*SSGLG 328
            + EL+H RWAML   G    E+LT I      +W  AG+ E    +           TTL  IE+++IG+ E +R                 N++L      YPGG +F   G G
Sbjct:  105 QAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDT-----------TTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.112e-14
Identity = 38/114 (33.33%), Postives = 56/114 (49.12%), Query Frame = 2
Query:   38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFF 310
            L+ +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  TL+  +++++G++E +R  +  DP+ +                       YPGGKFF
Sbjct:   93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFF 198          

HSP 2 Score: 43.1282 bits (100), Expect = 1.112e-14
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 3
Query:  306 FFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 446
            FFDPL LA          D EK   L++AEIKHARLAM+A L F  +A   GK PL
Sbjct:  197 FFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.433e-14
Identity = 28/63 (44.44%), Postives = 42/63 (66.67%), Query Frame = 3
Query:  306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 494
            FF+PLG   D +    L+L E+K+ RLAM+A LG+ +Q +VTG GP  N   H++DP++  +L
Sbjct:  207 FFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNNVL 269          

HSP 2 Score: 35.4242 bits (80), Expect = 2.433e-14
Identity = 32/119 (26.89%), Postives = 49/119 (41.18%), Query Frame = 2
Query:   59 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFF*SSGLGR 331
            E+I+GR+AML  +GA+  E+L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK         YPGG FF   G G+
Sbjct:  102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGK 215          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.435e-14
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 3
Query:  306 FFDPLGLAA-DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTILDTF 503
            +FDPLG  +  P K   L+  EIK+ RLAM+A +G   Q + TG GP++N   HL+DP H TI   F
Sbjct:  201 WFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267          

HSP 2 Score: 40.817 bits (94), Expect = 2.435e-14
Identity = 37/130 (28.46%), Postives = 55/130 (42.31%), Query Frame = 2
Query:    8 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGI------TWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR-----------------NSELDPEKRLYPGGKFF*SSGLG 328
            PL   ++   L+  ++ EL+H RWAML   G    E LT I      +W  AG+ E    +           TTL  +E+++IG+ E +R                 N++L      YPGG +F   G G
Sbjct:   90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDT-----------TTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWG 208          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   45 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 102          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:  194 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 251          
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB48_MAIZE2.178e-1660.34Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB4_SPIOL4.786e-1635.96Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB24_PEA1.777e-1551.56Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB12_PETHY6.573e-1546.27Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4A_SOLLC1.112e-1433.33Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB23_PEA2.433e-1444.44Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_SOLLC2.435e-1446.27Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2D_SOLLC7.482e-1463.79Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC7.482e-1463.79Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC7.482e-1463.79Chlorophyll a-b binding protein 1A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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