CK934472

Overview
NameCK934472
Unique NameCK934472
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934472_ssr555 microsatellite CK934472_ssr555:555..566. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8154 contig Csv1_Contig8154:433..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.027e-14
Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = 2
Query:   38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFF 310
            L+ +RE ELIHGRWAM A LG    +  +GI W +AG        +  G   PFS  +L+  ++L++G++E +R        +  +D                 ++ YPGGKFF
Sbjct:   93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFF 198          

HSP 2 Score: 43.1282 bits (100), Expect = 9.027e-14
Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 3
Query:  306 FFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 446
            FFDPL LA          D EK   L+LAEIKH+RLAM+A L F  +A   GK PL
Sbjct:  197 FFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.170e-13
Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 494
            F+PLG   D +    L+L EIK+ RLAM+A LG+ +QA+VTG GP  N   HL+DP++  +L
Sbjct:  206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVL 267          

HSP 2 Score: 31.9574 bits (71), Expect = 1.170e-13
Identity = 32/119 (26.89%), Postives = 47/119 (39.50%), Query Frame = 2
Query:   59 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFF*SSGLGR 331
            E+I+GR+AML   GA+  E L         T + W   G +      +Y          TL  +E+ ++G+ E +R  +            L  EK L       YPGG  F   G G+
Sbjct:  100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK 213          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPLGLA DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A H++DP++
Sbjct:  196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            FDPLGLA DPE KA L++ EIK+ RLAM +  GF VQA+VTGKGP+ N   HL+DP+
Sbjct:   79 FDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 3
Query:  264 QSLTQRRDSTREE---SFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 506
            Q  T  +D  +++     FDPLG + DP K   L+L EIK+ RLAM+AF+GF V Q+   G GPL N ATHL+DP H  I D  I
Sbjct:  154 QQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238          

HSP 2 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 2
Query:    8 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKF 307
            PL   T     +RF+E E+ H RWAML   G L  E L    W  A +   L +G ++YLG P+P+ ++ T++ IE L I + E QR  E DPEK+ YPGG F
Sbjct:   70 PLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF 172          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            +FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL DP+
Sbjct:  196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476
            FDPLGLA DP+    L++ EIK+ RLAM   LGF  QA+VTG+GP+ NW  HL DP
Sbjct:   51 FDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479
            +FDPLGLA DP   A L++ EIK+ RLAM +  GF VQA+VTGKGPL N   HL +P+
Sbjct:  193 YFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250          
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 3
Query:  309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482
            FDPL    DPE  A L++ EIK+ RLAM +  GF VQA+VTGKGPL N A HL+DP++
Sbjct:   53 FDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110          
The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CB4B_SOLLC9.027e-1432.46Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB13_SOLLC1.170e-1348.39Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB2F_SOLLC1.276e-1362.07Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.276e-1362.07Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB22_PINSY1.276e-1363.16Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB121_HORVU1.080e-1248.24Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB23_HORVU2.407e-1260.34Chlorophyll a-b binding protein of LHCII type III,... [more]
CB21_EUGGR3.143e-1258.93Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB23_SOLLC5.362e-1258.62Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB21_RAPSA5.362e-1258.62Chlorophyll a-b binding of LHCII type 1 protein (F... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_G03 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_G03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bp
GGGCACGCCGCTTCAGCCGTACACTGAAGTCTTTGGTCTGCAGAGGTTCC
GTGAGTGTGAGCTCATTCATGGACGCTGGGCCATGTTGGCTACTCTCGGT
GCCCTCACTGTTGAGTGGCTCACTGGGATTACTTGGCAAGACGCTGGCAA
GGTAGAGTTAGTTGAAGGATCATCATACCTGGGGCAACCACTTCCATTCT
CAATAACAACGTTGATATGGATTGAGGTTTTGGTAATTGGCTACATTGAG
TTCCAAAGAAACTCAGAGCTTGACCCAGAGAAGAGACTCTACCCGGGAGG
AAAGTTTTTTTGATCCTCTGGGCTTGGCCGCTGACCCGGAAAAGAAAGCC
ACCCTTCAATTGGCAGAGATCAAGCACGCCCGCCTTGCCATGGTTGCATT
CCTTGGCTTCGCTGTCCAAGCTGTTGTCACCGGAAAAGGCCCTCTCAACA
ACTGGGCTACCCACTTGAGCGATCCTCTTCACACAACCATTCTTGACACC
TTCATCTCTTAGATTTCTGGTGTAGCCTCCAGTACTTGGCAGTTGGCACT
ATTGTTATTATTATTATATGCGCCTATCTTGTAAAAAGAATTTATAACGT
TTGACAGCTTAAGGGGAATGCTATGGCTTCATATTTTAAAGCAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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