CK934472
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 9.027e-14 Identity = 37/114 (32.46%), Postives = 56/114 (49.12%), Query Frame = 2 Query: 38 LQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQR--------NSELD---------------PEKRLYPGGKFF 310 L+ +RE ELIHGRWAM A LG + +GI W +AG + G PFS +L+ ++L++G++E +R + +D ++ YPGGKFF Sbjct: 93 LKWYREAELIHGRWAMAAVLGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFF 198 HSP 2 Score: 43.1282 bits (100), Expect = 9.027e-14 Identity = 29/56 (51.79%), Postives = 33/56 (58.93%), Query Frame = 3 Query: 306 FFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPL 446 FFDPL LA D EK L+LAEIKH+RLAM+A L F +A GK PL Sbjct: 197 FFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.170e-13 Identity = 30/62 (48.39%), Postives = 42/62 (67.74%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLHTTIL 494 F+PLG D + L+L EIK+ RLAM+A LG+ +QA+VTG GP N HL+DP++ +L Sbjct: 206 FNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNNVL 267 HSP 2 Score: 31.9574 bits (71), Expect = 1.170e-13 Identity = 32/119 (26.89%), Postives = 47/119 (39.50%), Query Frame = 2 Query: 59 ELIHGRWAMLATLGALTVEWL---------TGITWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNSE------------LDPEKRL-------YPGGKFF*SSGLGR 331 E+I+GR+AML GA+ E L T + W G + +Y TL +E+ ++G+ E +R + L EK L YPGG F G G+ Sbjct: 100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNY-----TLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGK 213
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13 Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A H++DP++ Sbjct: 196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13 Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPLGLA DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A H++DP++ Sbjct: 196 FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13 Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479 FDPLGLA DPE KA L++ EIK+ RLAM + GF VQA+VTGKGP+ N HL+DP+ Sbjct: 79 FDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPV 135
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12 Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 264 QSLTQRRDSTREE---SFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAV-QAVVTGKGPLNNWATHLSDPLHTTILDTFI 506 Q T +D +++ FDPLG + DP K L+L EIK+ RLAM+AF+GF V Q+ G GPL N ATHL+DP H I D I Sbjct: 154 QQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 238 HSP 2 Score: 72.0182 bits (175), Expect = 3.143e-12 Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 2 Query: 8 PLQPYTEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITWQDAGK-VELVEG-SSYLGQPLPF-SITTLIWIEVLVIGYIEFQRNSELDPEKRLYPGGKF 307 PL T +RF+E E+ H RWAML G L E L W A + L +G ++YLG P+P+ ++ T++ IE L I + E QR E DPEK+ YPGG F Sbjct: 70 PLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAF 172
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12 Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 3 Query: 306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479 +FDPLGLA DP A L++ EIK+ RLAM + GF VQA+VTGKGPL N HL DP+ Sbjct: 196 YFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12 Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDP 476 FDPLGLA DP+ L++ EIK+ RLAM LGF QA+VTG+GP+ NW HL DP Sbjct: 51 FDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12 Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 3 Query: 306 FFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPL 479 +FDPLGLA DP A L++ EIK+ RLAM + GF VQA+VTGKGPL N HL +P+ Sbjct: 193 YFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250
BLAST of CK934472 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12 Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 3 Query: 309 FDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAVVTGKGPLNNWATHLSDPLH 482 FDPL DPE A L++ EIK+ RLAM + GF VQA+VTGKGPL N A HL+DP++ Sbjct: 53 FDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVN 110 The following BLAST results are available for this feature:
BLAST of CK934472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 81
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934472 ID=CK934472; Name=CK934472; organism=Citrus sinensis; type=EST; length=671bpback to top |