CK934489

Overview
NameCK934489
Unique NameCK934489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length833
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1188 contig Csv1_Contig1188:1..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934489 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 1.085e-37
Identity = 86/223 (38.57%), Postives = 121/223 (54.26%), Query Frame = 3
Query:  108 SAQNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-C----NQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 746
            +AQNCG    C  G CCS++G+CG T  YC +GCQS  C     +   G      G AG G  +  +++   F  + + +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   KYYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM
Sbjct:   26 AAQNCG----CQDGYCCSQWGYCGTTEAYCGQGCQSGPCWGSGGEAAAGMAGRKAG-AGAGVSVESVVTEAFFNGI-KNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of CK934489 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.385e-37
Identity = 95/230 (41.30%), Postives = 115/230 (50.00%), Query Frame = 3
Query:  111 AQNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREV-GAASSDYCDPN----YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMT 749
            AQNCG    C    CCS FG+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    KYYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT
Sbjct:   27 AQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of CK934489 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.776e-36
Identity = 84/219 (38.36%), Postives = 117/219 (53.42%), Query Frame = 3
Query:  108 SAQNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 746
            +AQNCG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+  +++ YCD +   +PC    KYYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNA-YCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of CK934489 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.467e-34
Identity = 85/219 (38.81%), Postives = 112/219 (51.14%), Query Frame = 3
Query:  108 SAQNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN----YPCRGK--YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 746
            SAQNCG    C  G CCS++G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC     Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
BLAST of CK934489 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 3.267e-34
Identity = 79/203 (38.92%), Postives = 112/203 (55.17%), Query Frame = 3
Query:  153 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPCRG--KYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWM 746
            CCS+ G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC    +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGH-------------LCYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of CK934489 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.828e-24
Identity = 57/105 (54.29%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  105 GSAQNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 401
            GSA+ CG      +CPGG CCS +GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   20 GSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
The following BLAST results are available for this feature:
BLAST of CK934489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_ORYSJ1.085e-3738.57Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU5.385e-3741.30Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIA_MAIZE7.776e-3638.36Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU1.467e-3438.81Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIT_DIOJA3.267e-3438.92Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHIC_POPTR6.828e-2454.29Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E04 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934489 ID=CK934489; Name=CK934489; organism=Citrus sinensis; type=EST; length=833bp
GGGACACCAAGCAGAGGATAATTGATATCATAACTGTTGCTTTCAAAATG
AGGCTTATTGGGTCCTTACTAATTTTCTCTCTGGTTTTATCTTTTGTACT
AGGAGGCTCAGCACAGAACTGTGGAAGCGGCGTTGTGTGCCCAGGAGGGG
AGTGTTGTAGTCGATTTGGTTGGTGTGGCCTAACAACAGACTACTGTTGT
GAAGGCTGCCAAAGTAACTGTAATCAGGTTGTTTGCGGTGAATGTGATCC
CGACGACGGGACGGCTGGCGATGGCGGTGAACTGGGCAAGATCATCTCAA
GGAAGATGTTTGAAGACTTGCTTGAGTATAGAAATGATAAACGATGCCCT
GCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTT
TCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAGAGAAATTG
CTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGATGGCCCGAT
GCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGGGAAGTTGG
TGCTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCGAGGGAAGT
ACTATGGCCGAGGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGG
TGCGGAGAAGCCTTGGGGGTGGACTTGTTGAACAATCCAGACCTACTTGC
CACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTG
CACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAA
CCATCAGCAAATGACGTAAACGCCGGCCGGCTT
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