CK934494

Overview
NameCK934494
Unique NameCK934494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934494_ssr26 microsatellite CK934494_ssr26:26..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr125 microsatellite CK934494_ssr125:125..139. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr186 microsatellite CK934494_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1690 contig Csv1_Contig1690:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL25_ARATH (Probable germin-like protein subfamily 2 member 5 OS=Arabidopsis thaliana GN=At5g26700 PE=2 SV=2)

HSP 1 Score: 207.223 bits (526), Expect = 6.602e-53
Identity = 100/168 (59.52%), Postives = 128/168 (76.19%), Query Frame = 2
Query:  188 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A A  EMLQDVCVADL++ +KVNG+ CK     +  DF+   LA  AATN + GS VT ANV+ +PGLNTLG+S++RIDYAP G+NPPH HPRA+EI+FVLEGQL VGF TTA  L++K++ KG+ F FP+GL+HFQKN  N PASV+A F+SQL GT ++  +LF +
Sbjct:   18 AMASAEMLQDVCVADLSNAVKVNGYTCKDSTQITPEDFYFKGLANIAATNTSTGSVVTGANVEKLPGLNTLGLSMSRIDYAPNGLNPPHVHPRASEIIFVLEGQLYVGFVTTAGKLIAKNLNKGDVFTFPKGLIHFQKNIANSPASVLAAFDSQLPGTQSLVASLFGA 185          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL23_ARATH (Germin-like protein subfamily 2 member 3 OS=Arabidopsis thaliana GN=GLP8 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.054e-50
Identity = 100/169 (59.17%), Postives = 126/169 (74.56%), Query Frame = 2
Query:  188 AAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAAT-NNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A AD  MLQD CVADL++ +KVNG+PCK  A  +  DF+   LA  AAT N++ GS VT ANV+ +PGLNTLGVS++RIDYAPGG+NPPH HPRA+E +FVLEG+L VGF TT   L+SK + KG+ FVFP+ L+HFQ+N    PASV+A F+SQL GT  +  +LF S
Sbjct:   20 ALADTNMLQDFCVADLSNGLKVNGYPCKDPAKVTPEDFYFIGLATAAATANSSMGSAVTGANVEKVPGLNTLGVSISRIDYAPGGLNPPHLHPRASEAIFVLEGRLFVGFLTTTGKLISKHVNKGDVFVFPKALLHFQQNPNKAPASVLAAFDSQLPGTQVVGPSLFGS 188          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL14_ORYSJ (Germin-like protein 1-4 OS=Oryza sativa subsp. japonica GN=Os01g0952100 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.880e-45
Identity = 98/179 (54.75%), Postives = 125/179 (69.83%), Query Frame = 2
Query:  191 AADPEMLQDVCVAD---LTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAA--TNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAP-GGINPPHTHPRATEIVFVLEGQLDVGFFT-----TANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAST 688
            A DP+MLQD+CVAD   L  P++VNGFPCK  AN +  DFF   L KPA   + N  GS VTAA V+ IPGLNTLGVS+AR+DYAP GG NPPH+HPRATEI+FV +G L+VGF        ++ L+++ + KG  FVFPRGL+H++++ G  PA  I+ F+SQL GT   A  LF S+
Sbjct:   27 AGDPDMLQDICVADYKSLQGPLRVNGFPCKPEANVTAEDFFFPGLGKPADVYSGNPMGSAVTAATVERIPGLNTLGVSMARVDYAPWGGANPPHSHPRATEILFVADGLLEVGFVVATAAPASSRLITRVVPKGGVFVFPRGLLHYERSVGEKPAVAISAFDSQLPGTQAAADALFGSS 205          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.284e-44
Identity = 89/165 (53.94%), Postives = 108/165 (65.45%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            ++D + LQD CV DL +   +NGFPCK+  S  DFF   L  P  T+N  G TV  ANV T PGLNTLG+S+  ++ APGG+NPPH HPRATE+  V+EG + VGF +T N L SK +  GE FV PRGLVHFQ N G V A +I  FNSQL G   +  TLF S
Sbjct:   27 SSDSDPLQDFCVGDLKASASINGFPCKSAVSASDFFYSGLGGPLDTSNPNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLVHFQWNVGQVKARMITAFNSQLPGAVVLPSTLFGS 191          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 88/165 (53.33%), Postives = 110/165 (66.67%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            ++D + LQD CV DL +   +NGFPCK++ S  DFF   L  P  T+   G  V+ ANV T PGLNTLG+S+  +++APGG+NPPH+HPRATE   V+EG + VGF TT N L SK +  GE FV PRGLVHFQ N G V A +I  FNSQL G+  +  TLF S
Sbjct:   27 SSDSDPLQDFCVGDLKASPSINGFPCKSSVSASDFFFSGLGGPLNTSTPNGVAVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLVHFQWNVGKVKARLITSFNSQLPGSAVLPSTLFGS 191          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL82_ORYSJ (Germin-like protein 8-2 OS=Oryza sativa subsp. japonica GN=GER3 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.556e-44
Identity = 99/171 (57.89%), Postives = 117/171 (68.42%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD CVADL SP++VNGF CK   N S  DFF +  L KP  TNN  GS VT  NV  +PGLNTLG+S+AR+D+AP G+NPPHTHPRATEI  VLEG L VGF T+   N L+SK + KG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S
Sbjct:   24 ASDPSPLQDFCVADLNSPVRVNGFVCKNPMNASADDFFKAAMLDKPRDTNNKVGSNVTLVNVLQLPGLNTLGISIARLDFAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNRLLSKVLNKGDVFVFPEGLIHFQFNPNPHKPAVAIAALSSQNPGVITIANAVFGS 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.243e-42
Identity = 94/171 (54.97%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAST 688
            A DP  LQD CVAD+ SP++VNGFPCK   N +  DFF+  K   P  T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA   +  +SQ  G   IA  +F ST
Sbjct:   23 AFDPSPLQDFCVADMASPVRVNGFPCKNPMNVTSDDFFNAAKFDMPRNTMNKVGSNVTNLNVINFPGLNTLGISLARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGST 193          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.168e-41
Identity = 93/170 (54.71%), Postives = 112/170 (65.88%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A DP  LQD CVAD+ SP++VNGFPCK     +  DFF+  K   P +T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + N PA   +  NSQ  G   IA  +F S
Sbjct:   23 AFDPSPLQDFCVADMKSPVRVNGFPCKNPMEVNSDDFFNAAKFDMPRSTMNKVGSNVTNLNVLNFPGLNTLGISLARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGS 192          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL23_ORYSJ (Putative germin-like protein 2-3 OS=Oryza sativa subsp. japonica GN=Os02g0491800 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 92/169 (54.44%), Postives = 109/169 (64.50%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD+CVAD  S ++VNG  CK   + +  DFF   L     T N  GS VTA NV  +PGLNTLG+SLARIDYA  G+NPPHTHPRATEI+ VLEG L VGF T+   N L +K I KG+ FVFP+GLVHFQ N G   A  I   +SQ  G   +A  +F S
Sbjct:   28 ASDPSHLQDLCVADKASTVRVNGVACKDGEDVAAEDFFFSGLHMAGNTTNKQGSAVTAVNVAQVPGLNTLGISLARIDYALHGLNPPHTHPRATEILTVLEGSLYVGFVTSNPENKLFTKVINKGDVFVFPKGLVHFQFNYGTTDAVAIVALSSQNPGVITVANAVFGS 196          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL22_ORYSJ (Putative germin-like protein 2-2 OS=Oryza sativa subsp. japonica GN=Os02g0491700 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.439e-41
Identity = 91/169 (53.85%), Postives = 107/169 (63.31%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP +LQD CV D  S ++VNGFPCK   +    DFF   L     T N  GS VT  NV  IPGLNT+GVSL RIDYAP G+NPPHTHPRATEI  VLEG L VGF  +   N L +K + KG+ FVFP+GLVHFQ NNG   A  +A  +SQ  G   +   +F S
Sbjct:   28 ASDPGLLQDFCVVDKMSQVRVNGFPCKDAKDVVAGDFFFSGLHMAGNTTNKQGSNVTTVNVAQIPGLNTMGVSLVRIDYAPNGLNPPHTHPRATEIPTVLEGSLYVGFVISNPENKLFTKVLNKGDVFVFPQGLVHFQFNNGTNNAVALAALSSQNPGVITVGNAVFGS 196          
The following BLAST results are available for this feature:
BLAST of CK934494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL25_ARATH6.602e-5359.52Probable germin-like protein subfamily 2 member 5 ... [more]
GL23_ARATH1.054e-5059.17Germin-like protein subfamily 2 member 3 OS=Arabid... [more]
GL14_ORYSJ3.880e-4554.75Germin-like protein 1-4 OS=Oryza sativa subsp. jap... [more]
GLT1_ARATH3.284e-4453.94Germin-like protein subfamily T member 1 OS=Arabid... [more]
GLT2_ARATH7.317e-4453.33Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL82_ORYSJ9.556e-4457.89Germin-like protein 8-2 OS=Oryza sativa subsp. jap... [more]
GL83_ORYSJ5.243e-4254.97Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ1.168e-4154.71Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL23_ORYSJ4.439e-4154.44Putative germin-like protein 2-3 OS=Oryza sativa s... [more]
GL22_ORYSJ4.439e-4153.85Putative germin-like protein 2-2 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934494 ID=CK934494; Name=CK934494; organism=Citrus sinensis; type=EST; length=688bp
GGGGAAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCT
CTATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATA
ATTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGAC
ACTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATC
CCGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAA
GTCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTC
AGACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAG
TAACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTC
TCACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACAC
GCACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACG
TAGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAG
GGTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAA
TGGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGG
GGACTCCGAACATTGCTCTTACATTGTTTGCATCTACG
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