CK934494

Overview
NameCK934494
Unique NameCK934494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934494_ssr26 microsatellite CK934494_ssr26:26..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr125 microsatellite CK934494_ssr125:125..139. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr186 microsatellite CK934494_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1690 contig Csv1_Contig1690:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 97/172 (56.40%), Postives = 115/172 (66.86%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMD----FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD CVAD+ SP++VNGF C  N  E++    F + KL  P  TN   GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP+GL+HFQ N N + PA  IA  +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDFCVADMHSPVRVNGFAC-LNPMEVNADHFFKAAKLDTPRKTNKV-GSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGS 191          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL41_ORYSJ (Germin-like protein 4-1 OS=Oryza sativa subsp. japonica GN=Os04g0617900 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 93/174 (53.45%), Postives = 110/174 (63.22%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDK-LAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAST 688
            A+DP  LQD CVAD  S + VNGF CK     +  DFF  K L  P  T N  GS VT   V  +PGLNTLG+S ARID+AP G NPPHTHPRATEI+ VL+G L VGF T+      N+  +K +  G+ FVFP+GL+HFQ NNG VPA  IA  +SQ  G   IA  +F ST
Sbjct:   27 ASDPSQLQDFCVADKLSAVFVNGFVCKNPKQVTANDFFLPKALGVPGNTVNAQGSAVTPVTVNELPGLNTLGISFARIDFAPNGQNPPHTHPRATEILTVLQGTLLVGFVTSNQPGGGNLQFTKLLGPGDVFVFPQGLIHFQLNNGAVPAVAIAALSSQNPGVITIANAVFGST 200          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 87/168 (51.79%), Postives = 109/168 (64.88%), Query Frame = 2
Query:  188 AAADPEMLQDVCVADLTSPIKVNGFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A AD   LQD+CVADL +   V+GFPCK   S +  DFF D + +  +T+N FG   T A V   PGLNTLG+S+ R D APGG+NPPH+HPRA+E+V VL G++ VGF T AN L SK +++ E FV PRGL HFQ N G   AS +A F+SQ  G       LFA+
Sbjct:   27 AVADSPPLQDICVADLRAATAVDGFPCKPTASVVSDDFFCDAIVQAPSTSNPFGVNSTRATVSAFPGLNTLGLSITRTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFAT 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL21_ORYSJ (Putative germin-like protein 2-1 OS=Oryza sativa subsp. japonica GN=Os02g0491600 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.758e-40
Identity = 90/172 (52.33%), Postives = 108/172 (62.79%), Query Frame = 2
Query:  182 NTAAADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            N  A+DP  LQD CVAD  S + VNGF CK  A  +  DFF   L     T+N  GS VT  NV  I GLNTLG+SLAR+DYAP G+NPPH HPRATEI+ +LEG L VGF T+   N L +K + KG+ FVFP+GL+HFQ N G      +A  +SQ  G   IA  +F S
Sbjct:   18 NAFASDPSQLQDFCVADKMSQVLVNGFACKDPAAITVEDFFFSGLHMAGNTSNRQGSAVTGVNVAQISGLNTLGISLARVDYAPYGLNPPHIHPRATEILTILEGSLYVGFVTSNPENKLFTKVLNKGDVFVFPQGLIHFQFNYGTKDVIALAALSSQNPGVITIANAVFGS 189          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL86_ORYSJ (Germin-like protein 8-6 OS=Oryza sativa subsp. japonica GN=Os08g0189500 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.371e-40
Identity = 94/172 (54.65%), Postives = 109/172 (63.37%), Query Frame = 2
Query:  185 TAAADPEMLQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            T A+DP  LQD CVAD  SP+ VNGF C    + +   FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK +KKG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S
Sbjct:   21 TIASDPSPLQDFCVADEHSPVLVNGFACLDPKHVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLKKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGS 192          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL812_ORYSJ (Germin-like protein 8-12 OS=Oryza sativa subsp. japonica GN=Os08g0231400 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 91/170 (53.53%), Postives = 111/170 (65.29%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSD-KLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A DP  LQD CVAD+ SP++VNGF CK   + S  DFF+  K   P  T N  GS VT  NV   PGLNTLG+SLARIDYAP G+NPPH HPRATE++ VLEG L VGF T+  N L SK + KG+ FVFP+ ++HFQ N + + PA   +  +SQ  G   IA  +F S
Sbjct:   23 AYDPSPLQDFCVADMNSPVRVNGFACKNPMDVSSEDFFNAAKFDMPRNTFNKLGSNVTNLNVMEFPGLNTLGISLARIDYAPMGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNKLFSKVVCKGDVFVFPKAMIHFQMNLDHDKPAVAQSALSSQNPGVITIASAVFGS 192          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL123_ORYSJ (Putative germin-like protein 12-3 OS=Oryza sativa subsp. japonica GN=Os12g0154900 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.093e-39
Identity = 93/175 (53.14%), Postives = 116/175 (66.29%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD+CVAD  SP++VNGFPCK   + S  DFF +  L KP   T +  GS VT  NV  + GLNTLG+S+ARIDYAP G NPPHTHPRATEI+ V+EG L VGF T+      N L +K++ KG+ FVFP GL+HFQ N + + PA+ I   +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDLCVADKNSPVRVNGFPCKDAKDVSVDDFFLAANLDKPMDITKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILSVIEGSLYVGFVTSNQANGENKLFTKTLNKGDVFVFPEGLIHFQFNPSYDKPAAAIVALSSQNPGAITIANAVFGS 196          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL810_ORYSJ (Germin-like protein 8-10 OS=Oryza sativa subsp. japonica GN=GLP2 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.428e-39
Identity = 93/170 (54.71%), Postives = 108/170 (63.53%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMD-FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD CVAD+ SP+ VNGF C    +   D FF   +       N  GS VT  NV  IPGLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+   N L SK + KG+ FVFP GL+HFQ N N + PA  IA  +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDFCVADMHSPVLVNGFACLDPKYVNADHFFKAAMLDTPRKTNKVGSNVTLINVMQIPGLNTLGISIARIDYAPLGENPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPEGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGS 191          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL81_ORYSJ (Putative germin-like protein 8-1 OS=Oryza sativa subsp. japonica GN=Os08g0188900 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.865e-39
Identity = 94/172 (54.65%), Postives = 113/172 (65.70%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPAATN-NTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            AA+P  LQD CVADL S ++VNGF CK   N S  DFF +  L KP  T  N  GS +T  NV  IPGLNTLG+S+ R+DYAP G+NPPHTHPRATEI  VLEG L VGF T+   N L SK + KG+ FVFP+GL+HFQ N + + PA   +  +SQ  G   IA  +F S
Sbjct:   23 AAEPSPLQDFCVADLNSAVRVNGFACKNPTNVSADDFFKAAMLDKPRDTAVNKVGSNITLINVMEIPGLNTLGISIVRVDYAPLGLNPPHTHPRATEIFTVLEGTLYVGFVTSNPDNKLFSKVLNKGDVFVFPKGLIHFQFNLDPHKPAIATSAISSQNPGIITIANAVFRS 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL122_ORYSJ (Germin-like protein 12-2 OS=Oryza sativa subsp. japonica GN=Os12g0154800 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.181e-39
Identity = 94/175 (53.71%), Postives = 115/175 (65.71%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFF-SDKLAKPA-ATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD CVAD  SP+ VNGFPCK   + +  DFF +  L KP   T +  GS VT  NV  + GLNTLG+S+ARIDYAP G NPPHTHPRATEI+ VLEG L VGF T+      N L +K++ KG+ FVFP+GL+HFQ N + + PA  IA  +SQ  G   IA  +F S
Sbjct:   22 ASDPSPLQDFCVADRNSPVHVNGFPCKDAKDVNVDDFFLAANLDKPMDTTKSKAGSNVTLINVMKLAGLNTLGISMARIDYAPKGQNPPHTHPRATEILTVLEGTLYVGFVTSNQANGENKLFTKTLNKGDVFVFPQGLIHFQFNPSYDKPAVAIAALSSQNPGAITIANAVFGS 196          
The following BLAST results are available for this feature:
BLAST of CK934494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL85_ORYSJ1.687e-4056.40Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]
GL41_ORYSJ1.687e-4053.45Germin-like protein 4-1 OS=Oryza sativa subsp. jap... [more]
GL12_ORYSJ1.687e-4051.79Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL21_ORYSJ3.758e-4052.33Putative germin-like protein 2-1 OS=Oryza sativa s... [more]
GL86_ORYSJ8.371e-4054.65Germin-like protein 8-6 OS=Oryza sativa subsp. jap... [more]
GL812_ORYSJ1.093e-3953.53Germin-like protein 8-12 OS=Oryza sativa subsp. ja... [more]
GL123_ORYSJ1.093e-3953.14Putative germin-like protein 12-3 OS=Oryza sativa ... [more]
GL810_ORYSJ1.428e-3954.71Germin-like protein 8-10 OS=Oryza sativa subsp. ja... [more]
GL81_ORYSJ1.865e-3954.65Putative germin-like protein 8-1 OS=Oryza sativa s... [more]
GL122_ORYSJ3.181e-3953.71Germin-like protein 12-2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934494 ID=CK934494; Name=CK934494; organism=Citrus sinensis; type=EST; length=688bp
GGGGAAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCT
CTATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATA
ATTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGAC
ACTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATC
CCGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAA
GTCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTC
AGACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAG
TAACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTC
TCACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACAC
GCACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACG
TAGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAG
GGTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAA
TGGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGG
GGACTCCGAACATTGCTCTTACATTGTTTGCATCTACG
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