CK934494

Overview
NameCK934494
Unique NameCK934494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934494_ssr26 microsatellite CK934494_ssr26:26..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr125 microsatellite CK934494_ssr125:125..139. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr186 microsatellite CK934494_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1690 contig Csv1_Contig1690:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL120_ARATH (Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 87/171 (50.88%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  191 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AG +SQ  G   IA T+F S
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPKRVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQVNVGKIPAVAFAGLSSQNAGVITIANTVFGS 192          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL116_ARATH (Germin-like protein subfamily 1 member 16 OS=Arabidopsis thaliana GN=At5g39130 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.478e-36
Identity = 87/171 (50.88%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  191 AADPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A DP  LQD CVA D    + VNG  CK        DFF   L  P  TNN  GS VT  NV  IPGLNT+G+SL RIDYAP G NPPHTHPR +EI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G +PA   AG +SQ  G   IA T+F S
Sbjct:   22 AYDPSPLQDFCVAIDDLKGVFVNGRFCKDPERVDAKDFFFSGLNVPGNTNNQVGSNVTTVNVDQIPGLNTMGISLVRIDYAPHGQNPPHTHPRGSEILVLVEGTLYVGFVSSNQDNNRLFAKVLHPGDVFVFPIGMIHFQLNIGKIPAIAFAGLSSQNAGVITIANTVFGS 192          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL119_ARATH (Germin-like protein subfamily 1 member 19 OS=Arabidopsis thaliana GN=At5g39180 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.521e-36
Identity = 89/173 (51.45%), Postives = 105/173 (60.69%), Query Frame = 2
Query:  191 AADPEMLQDVCVA--DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAST 688
            A DP  LQD CVA  D  + + VNG  CK        DFFS  L +   TNN   S VT  NV  IPGLNTLG+SL RIDYAP G NPPHTHPRATEI+ ++EG L VGF ++    N L +K +  G+ FVFP G++HFQ N G  PA   AG +SQ  G   IA  +F ST
Sbjct:   21 AYDPSPLQDFCVAIDDPKNGVFVNGKFCKDPKQAKAEDFFSSGLNQAGITNNKVQSNVTTVNVDQIPGLNTLGISLVRIDYAPYGQNPPHTHPRATEILVLVEGTLYVGFVSSNQDNNRLFAKVLNPGDVFVFPIGMIHFQVNIGKTPAVAFAGLSSQNAGVITIADIVFGST 193          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: OXO1_HORVU (Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.615e-36
Identity = 84/170 (49.41%), Postives = 103/170 (60.59%), Query Frame = 2
Query:  194 ADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            +DP+ LQD CVADL    + VNG  CK      D   FS KL K   T+   GS VT  +V   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE FV PRGL+HFQ N G   A ++  FNSQ  G   + LTLF S
Sbjct:    1 SDPDPLQDFCVADLDGKAVSVNGHTCKPMSEAGDDFLFSSKLTKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGMVMKGELLVGILGSLDSGNKLYSRVVRAGETFVIPRGLMHFQFNVGKTEAYMVVSFNSQNPGIVFVPLTLFGS 170          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 91/169 (53.85%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  197 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            DP  LQD CVA D  S + VNG  CK        DFF+  L     T N  GS VT  NV  IPGLNTLGVSL RID+APGG NPPHTHPRATEI+ V+EG L VGF T+    N L SK +  G+ FVFP G++HFQ N G   A   AG  SQ  GT  IA  +F S
Sbjct:   26 DPSPLQDFCVAVDDASGVFVNGKFCKDPKYVKAEDFFTSGLNIAGNTINRVGSNVTNVNVDKIPGLNTLGVSLVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGS 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GER3_WHEAT (Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.251e-35
Identity = 84/171 (49.12%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSP-IKVNGFPCKANFSEMD--FFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGF---FTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            +++P  LQD CVADL    + VNG  CK      D   FS KLAK   T+   GS VT  NV   PG NTLGVS+ R+D+APGG NPPH HPRATEI  V++G+L VG      + N L S+ ++ GE F+ PRGL+HFQ N G   AS++  FNSQ      + LTLF S
Sbjct:   23 SSNPHPLQDFCVADLDGKAVSVNGHMCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTDLNVAEWPGTNTLGVSMNRVDFAPGGTNPPHIHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLMHFQFNVGKTEASMVVFFNSQSPSVVFVPLTLFGS 193          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GLP1_MESCR (Germin-like protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.081e-34
Identity = 82/173 (47.40%), Postives = 102/173 (58.96%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSP---IKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT-----ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLF 679
            A DP  LQD CV  +  P   + VNG  CK     +  DF    L  PA T+N  G   T      +PGLNTLG+S+AR+D+AP G+NPPHTHPRATE+  VLEG   VGF T+      N L +K + KG+ FVFP+GL+HFQ N GN P   I+G +SQ  G   IA  +F
Sbjct:   22 ATDPTQLQDFCVG-VNKPNDGLFVNGLFCKDPMEVNPDDFLFRGLNMPANTDNALGFAATLVTAANLPGLNTLGISVARLDFAPHGLNPPHTHPRATEVFVVLEGTFYVGFVTSNLADGGNKLFAKVLNKGDVFVFPQGLIHFQLNIGNYPGVGISGLSSQNPGVITIANAVF 193          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL111_ARATH (Germin-like protein subfamily 1 member 11 OS=Arabidopsis thaliana GN=At5g38940 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 86/171 (50.29%), Postives = 103/171 (60.23%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD CV+  TS   + VNG  CK     +  DFF   L       +  GSTVTA NV  + GLNTLG+SL RIDYA  G NPPHTHPRATEI+ V +G L VGF T+   N L SK + +G+ FVFP GL+HFQ N G  PA   A  +SQ  G   IA T+F +
Sbjct:   24 ASDPSQLQDFCVSANTSANGVFVNGKFCKDPKLVTADDFFFSGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVNGQNPPHTHPRATEILVVEQGTLLVGFVTSNPDNRLFSKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIANTVFGA 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL19_ARATH (Putative germin-like protein subfamily 1 member 9 OS=Arabidopsis thaliana GN=At5g38910 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.256e-34
Identity = 85/171 (49.71%), Postives = 104/171 (60.82%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD CV   T    + VNG  CK     +  DFF   L +    N   GS VTA NV  +PGLNTLG+SL RIDY   G NPPHTHPRA+E+++V  G L VGF T+   N L SK++ +G+ FVFP+GL+HFQ N G  PA   AG +SQ  G   IA T+F S
Sbjct:   22 ASDPSSLQDFCVGVNTPADGVFVNGKFCKDPKLVTVEDFFFTGLHEARPPNPKTGSNVTAVNVNNLPGLNTLGISLVRIDYGVYGQNPPHTHPRASEVLYVAVGTLFVGFVTSNPENRLFSKTLYEGDVFVFPQGLIHFQVNVGKYPAVAFAGLSSQNPGVITIADTVFGS 192          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL112_ARATH (Putative germin-like protein subfamily 1 member 12 OS=Arabidopsis thaliana GN=At5g38960 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 86/172 (50.00%), Postives = 104/172 (60.47%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLT--SPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNT-FGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A+DP  LQD C+   T  + + VNG  CK     +  DF+   L K   T ++  GS VT  NV  IPGLNTLG+SL RIDY   G NPPHTHPRATEI+ V EG L VGFF++   N L +K++ KG+ FVFP GL+HFQ N G  PA   A  +SQ  G   I  TLF S
Sbjct:   24 ASDPSPLQDFCIGVNTPANALFVNGKFCKDPKLVTADDFYFSGLDKARTTESSPVGSNVTTVNVNQIPGLNTLGISLVRIDYGINGQNPPHTHPRATEILLVQEGTLFVGFFSSFPENRLFNKTLNKGDVFVFPEGLIHFQVNIGKQPAVAFASLSSQNPGVIIIGNTLFGS 195          
The following BLAST results are available for this feature:
BLAST of CK934494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL120_ARATH1.478e-3650.88Germin-like protein subfamily 1 member 20 OS=Arabi... [more]
GL116_ARATH1.478e-3650.88Germin-like protein subfamily 1 member 16 OS=Arabi... [more]
GL119_ARATH2.521e-3651.45Germin-like protein subfamily 1 member 19 OS=Arabi... [more]
OXO1_HORVU5.615e-3649.41Oxalate oxidase 1 OS=Hordeum vulgare PE=1 SV=1[more]
GL17_ARATH1.251e-3553.85Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GER3_WHEAT1.251e-3549.12Oxalate oxidase GF-3.8 OS=Triticum aestivum PE=1 S... [more]
GLP1_MESCR3.081e-3447.40Germin-like protein OS=Mesembryanthemum crystallin... [more]
GL111_ARATH4.024e-3450.29Germin-like protein subfamily 1 member 11 OS=Arabi... [more]
GL19_ARATH5.256e-3449.71Putative germin-like protein subfamily 1 member 9 ... [more]
GL112_ARATH8.965e-3450.00Putative germin-like protein subfamily 1 member 12... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004258_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934494 ID=CK934494; Name=CK934494; organism=Citrus sinensis; type=EST; length=688bp
GGGGAAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCT
CTATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATA
ATTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGAC
ACTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATC
CCGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAA
GTCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTC
AGACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAG
TAACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTC
TCACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACAC
GCACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACG
TAGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAG
GGTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAA
TGGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGG
GGACTCCGAACATTGCTCTTACATTGTTTGCATCTACG
back to top