CK934494

Overview
NameCK934494
Unique NameCK934494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934494_ssr26 microsatellite CK934494_ssr26:26..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr125 microsatellite CK934494_ssr125:125..139. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr186 microsatellite CK934494_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1690 contig Csv1_Contig1690:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 85/173 (49.13%), Postives = 103/173 (59.54%), Query Frame = 2
Query:  185 TAAADPEMLQDVCVADLTSP--IKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            T A+DP  LQD CV+  +S   + VNG  CK     +  DFF   L       +  GSTVTA NV  + GLNTLG+SL RIDYA  G NPPHTHPRATEI+ V  G L VGF T+   N L +K + +G+ FVFP GL+HFQ N G  PA   A  +SQ  G   IA T+F +
Sbjct:   22 TIASDPSQLQDFCVSANSSANGVFVNGKFCKDPKLVTADDFFFPGLQTARPITSPVGSTVTAVNVNNLLGLNTLGISLVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGA 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL16_ARATH (Germin-like protein subfamily 1 member 6 OS=Arabidopsis thaliana GN=At3g04200 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 85/169 (50.30%), Postives = 102/169 (60.36%), Query Frame = 2
Query:  197 DPEMLQDVCVA-DLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT---ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            DP  LQD CVA   T+ + VNG  CK   + +  DF    L     T N  GS VT  +V  IPGLNTLGVSLAR+D+A GG NPPH HPRATEI+ V +G+L VGF ++    N L  K +K+G+ FVFP GL+HFQ N     A   AGF SQ  GT  IA  +F S
Sbjct:   27 DPNPLQDFCVAASETNRVFVNGKFCKDPKSVTANDFSYSGLNIARNTTNFLGSNVTTVDVNKIPGLNTLGVSLARLDFAQGGQNPPHIHPRATEILVVTKGKLLVGFVSSNQDNNRLFYKVLKRGDVFVFPIGLIHFQMNVRRTRAVAFAGFGSQNPGTIRIADAVFGS 195          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL51_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0197200 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.425e-32
Identity = 80/174 (45.98%), Postives = 106/174 (60.92%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVT-----AANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTT--ANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A DP  LQD CVAD TS ++VNG PCK  A  +  DFF   + +PAA     G+T +      A    IPGLNTLG S AR+D APGG+ PPH HPRA+E   VL G +  GF T+   + +V+K +++G+ F  P+GLVHF  NNG+ PA++ A  +SQ  G   +A  L A+
Sbjct:   28 AFDPNPLQDFCVADPTSKVRVNGLPCKDPAAVTADDFFFSGVGEPAAGGGR-GATASRRYGFTARSVDIPGLNTLGASAARVDVAPGGVFPPHYHPRASETAVVLAGAVYFGFVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEPAALYASLSSQNPGLVLVADALLAA 200          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL12_ARATH (Putative germin-like protein subfamily 1 member 2 OS=Arabidopsis thaliana GN=At3g04150 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 77/169 (45.56%), Postives = 101/169 (59.76%), Query Frame = 2
Query:  197 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            DP  LQD CVA + T+ + VNG  CK     +  DFF   L  P  T+N  G++VT  +V+ IPGLNTLG+++AR+D+APGG  PPH HPRA++I+ VL+GQL VGF ++ +    L SK +  G+ F FP GLV F  N G   A  I    SQ  G   I   +F S
Sbjct:   26 DPNPLQDYCVATNGTNRVFVNGKFCKDPKLVTANDFFYSGLNIPGNTSNRLGASVTDVDVRRIPGLNTLGIAIARLDFAPGGQLPPHIHPRASQIILVLKGQLSVGFVSSNDYNYTLFSKILYPGDVFAFPIGLVQFHANTGKTHAVAIGVVGSQDPGVIPIGDAVFGS 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL32_ARATH (Germin-like protein subfamily 3 member 2 OS=Arabidopsis thaliana GN=At3g10080 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.648e-29
Identity = 73/175 (41.71%), Postives = 101/175 (57.71%), Query Frame = 2
Query:  185 TAAADPEMLQDVCVAD-LTSPIKVNGF----PCKANFSEM---DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            T A+DP+ +QD C+   +TSP   + F    PCK N SE+   DF    L K A      G        +  PGLNTLG+S  R D  PG INPPH HPRATE+  +++G++  GF  + N + +K +++GE  V+P+GLVHFQ N G+V A+++ G NSQ  G   I   +F S
Sbjct:   22 TLASDPDPIQDFCIPKPVTSPYHDHHFSTNLPCK-NSSEVTTEDFVFSGL-KTAGNFTETGFATVPVGPENFPGLNTLGISFVRADLKPGSINPPHYHPRATEVAHLVKGRVYSGFVDSNNKVYAKVMEEGEMMVYPKGLVHFQMNVGDVTATIVGGLNSQNPGIQKIPSVVFGS 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GLT3_ARATH (Germin-like protein subfamily T member 3 OS=Arabidopsis thaliana GN=At1g74820 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 66/158 (41.77%), Postives = 87/158 (55.06%), Query Frame = 2
Query:  212 QDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            QD CVADL +    +G+PCK+  +  DFF   L  P  T+N  G     AN+ T PGLNTLG+S+  +  APGG N PH+HP  TE   V+EG + VGF TT   L SK I  G+ FV P GL+H++ N G     ++      L     +  TL A+
Sbjct:   41 QDFCVADLQATPTNSGYPCKSQVTSEDFFYSGLNTPLNTSNPKGIAANPANLLTFPGLNTLGISMYNVAIAPGGYNQPHSHPGVTEAGVVIEGSVLVGFLTTNYTLYSKVIGPGDMFVIPPGLIHYEGNVGKTQCRLLTVVADDLPSEVGVPHTLLAT 198          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL15_ARATH (Germin-like protein subfamily 1 member 5 OS=Arabidopsis thaliana GN=At3g04190 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.683e-29
Identity = 74/169 (43.79%), Postives = 101/169 (59.76%), Query Frame = 2
Query:  197 DPEMLQDVCVA-DLTSPIKVNGFPCKAN--FSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTAN---VLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            +P  LQD CVA + T+ + VNG  CK     +  DF++  L  P  T+   G  +T  +V+ +PGLNTLGV +ARID+APGG+ PPHTHPR +EI  V++G+L VGF ++      L +K +  G+ FVFP+GL+ F  N G   A VIA   SQ  G   I   +F S
Sbjct:   26 EPSPLQDYCVATNETNGVYVNGKFCKDPKCVTANDFYTSGLNVPGNTSTGPGVKITVVDVKRMPGLNTLGVDIARIDFAPGGLYPPHTHPRGSEIFLVMKGKLFVGFVSSNEYNYTLFTKVLYPGDVFVFPKGLIQFHANIGKTNAVVIAATGSQNPGRIIIGNAVFGS 194          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL31_ARATH (Germin-like protein subfamily 3 member 1 OS=Arabidopsis thaliana GN=GLP1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.134e-28
Identity = 67/162 (41.36%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  209 LQDVCVADLTSPIKVNGFPC--KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAST 688
            +QD CVA+L       G+PC    +    DF    L  P  T N   + VT A     PGLN LG+S AR+D AP G+ P HTHP A+E++FVL G +  GF ++AN +  +++K G+  VFP+GL+HFQ N G   AS +  FNS   G   +   LFA++
Sbjct:   19 VQDFCVANLKRAETPAGYPCIRPIHVKATDFVFSGLGTPGNTTNIINAAVTPAFAAQFPGLNGLGLSTARLDLAPKGVIPMHTHPGASEVLFVLTGSITAGFVSSANAVYVQTLKPGQVMVFPQGLLHFQINAGKSSASAVVTFNSANPGLQILDFALFANS 180          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GLP1_SINAL (Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.934e-28
Identity = 66/161 (40.99%), Postives = 93/161 (57.76%), Query Frame = 2
Query:  209 LQDVCVADLTSPIKVNGFPCKA--NFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            +QD CVAD   P   +G+ CK     +E DF    L K   T+N   + VT A      GLN L VSLAR+D A GG+ P HTHP A+E++ V++G +  GF ++AN +  K++ +G++ VFP+GL+HFQ N+G  PA     F S   G   +   LFA+
Sbjct:   22 VQDFCVADPKGPQNPSGYSCKNPDQVTENDFAFSGLGKAGNTSNVIKAAVTPAFAPAFAGLNGLDVSLARLDLAGGGVIPLHTHPGASEVLVVIQGTICAGFISSANKVYLKTLSRGDSMVFPQGLLHFQLNSGKGPALAFVAFGSSSPGLQILPFALFAN 182          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GLP1_BRANA (Germin-like protein 1 OS=Brassica napus GN=GER1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.526e-28
Identity = 66/167 (39.52%), Postives = 95/167 (56.89%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAST 688
            A   + +QD CVA+L       G+PC +    +   F   L  P  T N   + VT   V   P LN LG+S AR+D AP G+ P HTHP A+E++FVL+G +  GF ++AN +  +++K G+  VFP+GL+HFQ N G  PA+ +  F+S   G   +   LFA+T
Sbjct:   13 ALSNDSVQDFCVANLKRAETPAGYPCIRPIHVKASDFVFSLGTPGNTTNIISAAVTPGFVAQFPALNGLGISTARLDLAPKGVIPMHTHPGASEVLFVLDGSITAGFISSANSVYVQTLKPGQVMVFPQGLLHFQINAGKTPAAALVTFSSASPGLQILDFALFANT 179          
The following BLAST results are available for this feature:
BLAST of CK934494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL110_ARATH5.811e-3349.13Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL16_ARATH1.295e-3250.30Germin-like protein subfamily 1 member 6 OS=Arabid... [more]
GL51_ORYSJ6.425e-3245.98Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
GL12_ARATH1.026e-2945.56Putative germin-like protein subfamily 1 member 2 ... [more]
GL32_ARATH6.648e-2941.71Germin-like protein subfamily 3 member 2 OS=Arabid... [more]
GLT3_ARATH8.683e-2941.77Germin-like protein subfamily T member 3 OS=Arabid... [more]
GL15_ARATH8.683e-2943.79Germin-like protein subfamily 1 member 5 OS=Arabid... [more]
GL31_ARATH1.134e-2841.36Germin-like protein subfamily 3 member 1 OS=Arabid... [more]
GLP1_SINAL1.934e-2840.99Germin-like protein 1 OS=Sinapis alba GN=GLP1 PE=2... [more]
GLP1_BRANA2.526e-2839.52Germin-like protein 1 OS=Brassica napus GN=GER1 PE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934494 ID=CK934494; Name=CK934494; organism=Citrus sinensis; type=EST; length=688bp
GGGGAAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCT
CTATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATA
ATTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGAC
ACTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATC
CCGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAA
GTCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTC
AGACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAG
TAACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTC
TCACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACAC
GCACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACG
TAGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAG
GGTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAA
TGGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGG
GGACTCCGAACATTGCTCTTACATTGTTTGCATCTACG
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