CK934494

Overview
NameCK934494
Unique NameCK934494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934494_ssr26 microsatellite CK934494_ssr26:26..39. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr125 microsatellite CK934494_ssr125:125..139. BLAST: Citrus ESTs to Prunus persica proteins V1
CK934494_ssr186 microsatellite CK934494_ssr186:186..197. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1690 contig Csv1_Contig1690:1..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL31_ORYSJ (Germin-like protein 3-1 OS=Oryza sativa subsp. japonica GN=Os03g0179000 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.002e-25
Identity = 68/172 (39.53%), Postives = 98/172 (56.98%), Query Frame = 2
Query:  197 DPEMLQDVCVADLTSP-----IKVNGFPC-KANFSEMDFFS----DKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKN-NGNVPASVIAGFNSQLQGTPNIALTLF 679
            DP++L D CVAD  +        +NG  C     +  D F+     +   PAAT   F +T+T+    ++PG N  G+++ARID APGG+ PPH+HPRA+E   VL G + VGF  T+  L ++ ++ GE FVFPR +VHF  N +   PA V++G NSQ  G   +  + F
Sbjct:   23 DPDLLFDYCVADTAAATAAGAFHLNGLACIDPALARADHFATSALSRATNPAATLYGFNATLTSP-AASLPGANAQGLAMARIDLAPGGMAPPHSHPRASEAALVLSGSVLVGFADTSYRLYTQLLRAGEAFVFPRAMVHFLYNMDTAAPAVVLSGLNSQSPGAQLVPFSAF 193          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL34_ARATH (Germin-like protein subfamily 3 member 4 OS=Arabidopsis thaliana GN=At5g61750 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.614e-25
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 2
Query:  185 TAAADPEMLQDVC--VADLTSPIKVNGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNI 664
            + + D + +QD C       S   +NG+PCK     +  DF S KL +   T+N   S VT       PGLNTLG+S++R D    G  P H+HPR++E++FV++G +  GF  T N +    ++KG+ FVFP+GL+HF  + G  PA+  + +NSQ  G  NI
Sbjct:   15 SVSGDSDNMQDTCPTAPGEQSIFFINGYPCKNPTKITAQDFKSTKLTEAGDTDNYLQSNVTLLTALEFPGLNTLGLSVSRTDLERDGSVPFHSHPRSSEMLFVVKGVVFAGFVDTNNKIFQTVLQKGDVFVFPKGLLHFCLSGGFEPATAFSFYNSQNPGVVNI 178          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL92_ORYSJ (Putative germin-like protein 9-2 OS=Oryza sativa subsp. japonica GN=Os09g0568600 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.414e-25
Identity = 60/169 (35.50%), Postives = 92/169 (54.44%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFS----DKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A DP++L D  +    +P+ + G          DFF+     K+   ++       TVT A +   P LN   VS A + + P  +NPPHTHPR+ E++ V++G L VGF  T N L ++ +  G+ FVFP+G+VHFQ N+GN PA  ++ F S   G   + +T+F +
Sbjct:   25 AGDPDILTDYVIPANGNPMNITG----------DFFTFTGFRKVFNTSSAPEPNSFTVTKATMAEFPALNGQSVSYATLVFPPSTVNPPHTHPRSAELLLVVDGALSVGFIDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAPGVVPVPVTVFGT 183          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL93_ORYSJ (Germin-like protein 9-3 OS=Oryza sativa subsp. japonica GN=Os09g0568700 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.435e-23
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 2
Query:  191 AADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFS-DKLAKPAATNNTF-----GSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFAS 685
            A DP++L D  +   ++   + G          DFF+      P + N +        TVT A +   P LN   VS A + Y P  +NPPHTHPR+ E++ +++G L VGF  T N L ++ +  G+ FVFP+G+VHFQ N+GN PA  ++ F S   G  ++ +T+F +
Sbjct:   23 AGDPDILTDYVIPAGSNAENITG----------DFFTFTGFRNPLSMNMSMPMPNANFTVTKATMAEFPALNGQSVSYAVLMYPPATLNPPHTHPRSAELLLLVDGALSVGFVDTTNKLYTQDLAAGDMFVFPKGMVHFQFNSGNQPAMALSAFGSAAAGLVSVPVTVFGT 183          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL111_ORYSJ (Germin-like protein 11-1 OS=Oryza sativa subsp. japonica GN=Os11g0537300 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 67/167 (40.12%), Postives = 89/167 (53.29%), Query Frame = 2
Query:  194 ADPEMLQDVCVADLTSPIKV--NGFPCKANFSEM--DFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLFA 682
            +D   LQDVC        K+  NGF CK+  + M  DF +  L      +N   S+         PGLNTLG+S+AR D A  G   PH+HPRA+E++FV  G +  GFF T   L  K++ +G+ F+FPRGLVHF  N G   A+  +  NSQ  G   I   +FA
Sbjct:   23 SDSPPLQDVCPMAPQGERKLFMNGFFCKSPSTIMASDFKTLLLNHAGDLDNMVRSSANIITATEFPGLNTLGISMARTDIAVSGAVLPHSHPRASEMMFVHSGSVVAGFFDTKGKLFQKTLAEGDVFIFPRGLVHFIMNYGFGLATTFSVLNSQNPGVVGITHAMFA 189          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GLP1_IPONI (Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 57/137 (41.61%), Postives = 80/137 (58.39%), Query Frame = 2
Query:  209 LQDVCVADLTSPIKV-NGFPCK--ANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANVLVSKSIKKGENFVFPRGLVHFQKNNGNV 610
            + D CVA+        +GF CK  A  +  DF    LAKP  T N   + VT A V   PG+  LGV+LAR+D APGG+ P HTHP A+EI+ V+EG +   F ++ N +  K++  G+  VFP+GL+ FQ+  G +
Sbjct:   24 VNDFCVANGPGARDTPSGFVCKNTAKVTAADFVYSGLAKPGNTTNIINAAVTPAFVGQFPGVIGLGVTLARLDLAPGGVIPMHTHPGASEILNVVEGTILAAFISSGNKVYEKALYPGDVMVFPQGLLDFQEITGKI 160          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: GL91_ORYSJ (Germin-like protein 9-1 OS=Oryza sativa subsp. japonica GN=Os09g0568500 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.257e-19
Identity = 61/171 (35.67%), Postives = 90/171 (52.63%), Query Frame = 2
Query:  182 NTAAADPEMLQDVCVADLTSPIKVNGFPCKANFSEMDFFSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTA--NVLVSKSIKKGENFVFPRGLVHFQKNNG-NVPASVIAGFNSQLQGTPNIALTLFAS 685
            +  AADP++L D  V   T P  ++G    A F+  +  +     PA        TVT A     P L    VS A + +  G +NPPH HPRA+E++ V++G L VG    A    + +++++ G+ FVFP+G+VHFQ NNG +V A   + F S   GT ++   LF S
Sbjct:   22 SAGAADPDILTDFVVPSDTDPSGIDG----AFFTYKNLVTGNSGDPAKL------TVTKATHAEFPALLGQSVSYAALVFGAGTVNPPHIHPRASELLVVVQGPLLVGLVDAARNGTVYTQTLQTGDMFVFPKGMVHFQFNNGTDVVARAFSAFGSATPGTISLPAALFGS 182          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: SR1A_PHYPO (Spherulin-1A OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  185 TAAADPEMLQDVCVADLTSPIKVNGFPC-KANFSEMDFFSDKLAKPAATNNTFGSTVTAA--NVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFFTTANV-LVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLF 679
            ++AA PE++  +    L +P +++     K N    DF + KL     T  T G TV  +  N   + G N + +++  I+    GIN PHTHPRATEI F+  G+ + GFF       +  +++ G   VFP+G +HF+ N    PA  +A FN++  G    A + F
Sbjct:   43 SSAASPELVAQL----LNAPSELDRIKLLKDNQFVFDFKNSKLG---VTQGTGGKTVATSRTNFPAVIGHN-VAMTVGFIEAC--GINLPHTHPRATEINFIASGKFEAGFFLENQAKFIGHTLEAGMATVFPQGAIHFEINMNCEPAMFVAAFNNEDPGVQTTASSFF 201          
BLAST of CK934494 vs. ExPASy Swiss-Prot
Match: SR1B_PHYPO (Spherulin-1B OS=Physarum polycephalum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.645e-11
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 2
Query:  296 FSDKLAKPAATNNTFGSTVTAANVQTIPGLNTLGVSLARIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFF-TTANVLVSKSIKKGENFVFPRGLVHFQKNNGNVPASVIAGFNSQLQGTPNIALTLF 679
            F  K +K   T +  G TV  +     P +    +++        GIN PHTHPRATEI F+ +G+   GFF       +   +++G   VFP+G +HF+ N    PA  +A FN++  G    A + F
Sbjct:   61 FDFKNSKLGVTQSAGGKTVATSRTD-FPAVIGHNIAMTVGFIEACGINLPHTHPRATEINFIAKGRFQAGFFLENQATFIGHILEEGMATVFPQGAIHFEINLECEPAMFVAAFNNEDPGVQTTASSFF 188          
The following BLAST results are available for this feature:
BLAST of CK934494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
GL31_ORYSJ2.002e-2539.53Germin-like protein 3-1 OS=Oryza sativa subsp. jap... [more]
GL34_ARATH2.614e-2538.41Germin-like protein subfamily 3 member 4 OS=Arabid... [more]
GL92_ORYSJ3.414e-2535.50Putative germin-like protein 9-2 OS=Oryza sativa s... [more]
GL93_ORYSJ1.435e-2335.09Germin-like protein 9-3 OS=Oryza sativa subsp. jap... [more]
GL111_ORYSJ4.174e-2340.12Germin-like protein 11-1 OS=Oryza sativa subsp. ja... [more]
GLP1_IPONI2.991e-2141.61Germin-like protein OS=Ipomoea nil GN=GLP PE=2 SV=... [more]
GL91_ORYSJ1.257e-1935.67Germin-like protein 9-1 OS=Oryza sativa subsp. jap... [more]
SR1A_PHYPO1.758e-1332.54Spherulin-1A OS=Physarum polycephalum PE=1 SV=1[more]
SR1B_PHYPO1.645e-1132.56Spherulin-1B OS=Physarum polycephalum PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_E09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934494 ID=CK934494; Name=CK934494; organism=Citrus sinensis; type=EST; length=688bp
GGGGAAACAAATCAACACCAACTTTTCTCTCTCTCTCTCTTTCTCCATCT
CTATCTTTTCTTCTTTCTTTATCTTCGCCTGCAGCAATAACAAGATCATA
ATTGAACTTACTTTTGTAACCATGGCTGCTGCTGCTGCTGGTGCTTTGAC
ACTTTTTGTTGTCACTGTTGCTGTGATCTTGAACACTGCTGCTGCTGATC
CCGAAATGCTTCAAGATGTTTGTGTGGCAGACCTCACTTCCCCTATTAAA
GTCAATGGGTTCCCCTGCAAAGCAAACTTTTCAGAGATGGACTTTTTCTC
AGACAAATTAGCAAAGCCAGCAGCCACAAACAACACGTTTGGTTCAACAG
TAACAGCAGCCAATGTCCAAACAATCCCAGGCCTAAATACTCTTGGTGTC
TCACTCGCACGCATTGACTATGCCCCCGGCGGCATAAACCCGCCGCACAC
GCACCCCCGTGCCACCGAGATCGTCTTTGTCCTCGAGGGTCAACTCGACG
TAGGCTTCTTCACTACTGCCAACGTTTTGGTATCAAAATCCATCAAAAAG
GGTGAAAACTTCGTGTTTCCAAGAGGGTTGGTGCATTTCCAGAAGAACAA
TGGAAATGTCCCTGCTTCTGTTATTGCTGGCTTTAATAGCCAGCTGCAGG
GGACTCCGAACATTGCTCTTACATTGTTTGCATCTACG
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