CK934501

Overview
NameCK934501
Unique NameCK934501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:18..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_HUMAN (60S ribosomal protein L10a OS=Homo sapiens GN=RPL10A PE=1 SV=2)

HSP 1 Score: 253.447 bits (646), Expect = 1.126e-66
Identity = 121/216 (56.02%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L EAV  ++ +  + K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_BOVIN (60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3)

HSP 1 Score: 253.447 bits (646), Expect = 1.126e-66
Identity = 121/216 (56.02%), Postives = 160/216 (74.07%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L EAV  ++ +  + K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_CHLRE (60S ribosomal protein L10a OS=Chlamydomonas reinhardtii GN=RPL10A PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.921e-66
Identity = 132/217 (60.83%), Postives = 161/217 (74.19%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+ +D LRE+VS++V+ +K TK R F ET+ELQIGLKNYDPQKDKRFSGSV+LP +PRP+M+V   GD +H E+A  IG+D   VE                  YHAFLAS+SVIKQIPRLLGPGLNKAGKFP  +   ++LE  V +TK ++KFQLKKVLCMGVAV N+ M E +I  N+  ++NFLVSLLKKNWQNVRCLY+KSTMG   RI+
Sbjct:    1 MSKISNDVLRESVSALVEGAK-TKPRKFQETVELQIGLKNYDPQKDKRFSGSVRLPFVPRPRMRV-RAGDVKHCEQAGAIGVDAKGVEDLKKLNKNKKLVKKLAQAYHAFLASDSVIKQIPRLLGPGLNKAGKFPAPIN--KNLEEMVLDTKCSIKFQLKKVLCMGVAVANVGMTEGEIRTNIMYAINFLVSLLKKNWQNVRCLYIKSTMGKPIRIY 213          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_YEAST (60S ribosomal protein L1 OS=Saccharomyces cerevisiae GN=RPL1A PE=1 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 2.509e-66
Identity = 122/217 (56.22%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+ S  +RE V  +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSGS+KLP+ PRP M +C+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ MEE  +   + MSVNF VSLLKKNWQNV  L +KS+MGP+ R++
Sbjct:    1 MSKITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_CAEEL (60S ribosomal protein L10a OS=Caenorhabditis elegans GN=rpl-10a PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.277e-66
Identity = 123/217 (56.68%), Postives = 161/217 (74.19%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+  ++L EA++ +++ S E K R F ETIELQIGLKNYDPQKDKRFSGS++L HIPRP MKVC+ GD  H++EA    +  M  +                  Y AF+ASES+IKQIPR+LGPGLNKAGKFP++VTH ESL+SK +E +ATVKFQ+KKVLC+ VAVG++ + ++++  N+ +S+NFLVSLLKKNWQNVR L +KSTMG   R++
Sbjct:    1 MSKVSRESLNEAIAEVLKGSSE-KPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEELVSNISLSINFLVSLLKKNWQNVRSLNIKSTMGKPQRVY 216          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_MOUSE (60S ribosomal protein L10a OS=Mus musculus GN=Rpl10a PE=1 SV=3)

HSP 1 Score: 251.521 bits (641), Expect = 4.280e-66
Identity = 120/216 (55.56%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L EAV  ++ +  + K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +E + + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+L+TH E++ +KV+E K+T+KFQ+KKVLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDERKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_CANAL (60S ribosomal protein L10a OS=Candida albicans GN=RPL10A PE=3 SV=1)

HSP 1 Score: 251.521 bits (641), Expect = 4.280e-66
Identity = 123/217 (56.68%), Postives = 157/217 (72.35%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+ S  +RE V  +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP +PRP M  C+ GDA   + A+ +G+D M V+                  Y+AF+ASE +IKQIPRLLG  L+KAG+FPT V+H + L SKV + K+T+KFQLKKVLC+ VAVGN+ MEE  +   + M+ NFLVSLLKKNWQNV  L +KSTMGPS RI+
Sbjct:    1 MSKITSSGVREYVHKLLEYSTETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPQVPRPNMTTCIFGDAFDFDRAKSLGVDAMSVDDLKKLNKNKKLIKKLAKKYNAFIASEVLIKQIPRLLGRTLSKAGQFPTPVSHNDDLYSKVTDVKSTIKFQLKKVLCLAVAVGNVDMEEDVLVNQIMMAANFLVSLLKKNWQNVGSLVIKSTMGPSFRIY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_ASHGO (60S ribosomal protein L10a OS=Ashbya gossypii GN=RPL10A PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 5.589e-66
Identity = 122/217 (56.22%), Postives = 159/217 (73.27%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+ +  +R+ V  +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP  PRP M VC+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L SKV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:    1 MSKITTTHVRDNVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPVCPRPNMSVCIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLAKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYSKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_CANGA (60S ribosomal protein L10a OS=Candida glabrata GN=RPL10A PE=3 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 9.534e-66
Identity = 121/217 (55.76%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            MSK+ +  +RE V  +++YS ETKKRNF ET+ELQ+GLKNYDPQ+DKRFSG++KLP  PRP M +C+ GDA  V+ A+  G+D M V+                  Y+AF+ASE +IKQ+PRLLGP L+KAGKFPT V+H + L  KV + ++T+KFQLKKVLC+ VAVGN+ M+E  +   + MSVNFLVSLLKKNWQNV  L +KSTMGP+ R++
Sbjct:    1 MSKITTSHVRENVKELLKYSAETKKRNFLETVELQVGLKNYDPQRDKRFSGTLKLPVCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMDEDTLVNQILMSVNFLVSLLKKNWQNVGSLVIKSTMGPAFRLY 217          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL10A_MACFA (60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3)

HSP 1 Score: 249.595 bits (636), Expect = 1.626e-65
Identity = 119/216 (55.09%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   69 SKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            SK+  D L EAV  ++ +  + K+R F ET+ELQI LKNYDPQKDKRFSG+V+L   PRPK  VC+LGD QH +EA+ + + +MD+E                  Y AFLASES+IKQIPR+LGPGLNKAGKFP+ +TH E++ +KV+E K+T+KFQ+K+VLC+ VAVG++ M + ++  N+ ++VNFLVSLLKKNWQNVR LY+KSTMG   R++
Sbjct:    3 SKVSRDTLYEAVREVL-HGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPRPKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQIPRILGPGLNKAGKFPSPLTHNENMVAKVDEVKSTIKFQMKRVLCLAVAVGHVKMTDDELVYNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY 217          
The following BLAST results are available for this feature:
BLAST of CK934501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL10A_HUMAN1.126e-6656.0260S ribosomal protein L10a OS=Homo sapiens GN=RPL1... [more]
RL10A_BOVIN1.126e-6656.0260S ribosomal protein L10a OS=Bos taurus GN=RPL10A... [more]
RL10A_CHLRE1.921e-6660.8360S ribosomal protein L10a OS=Chlamydomonas reinha... [more]
RL1_YEAST2.509e-6656.2260S ribosomal protein L1 OS=Saccharomyces cerevisi... [more]
RL10A_CAEEL3.277e-6656.6860S ribosomal protein L10a OS=Caenorhabditis elega... [more]
RL10A_MOUSE4.280e-6655.5660S ribosomal protein L10a OS=Mus musculus GN=Rpl1... [more]
RL10A_CANAL4.280e-6656.6860S ribosomal protein L10a OS=Candida albicans GN=... [more]
RL10A_ASHGO5.589e-6656.2260S ribosomal protein L10a OS=Ashbya gossypii GN=R... [more]
RL10A_CANGA9.534e-6655.7660S ribosomal protein L10a OS=Candida glabrata GN=... [more]
RL10A_MACFA1.626e-6555.0960S ribosomal protein L10a OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934501 ID=CK934501; Name=CK934501; organism=Citrus sinensis; type=EST; length=839bp
GGGGAGGGTTTCTTTTTCGTATTTGAAGAAAAAAAATTCTGTAAAGGGCT
CCAAGCGCTTCAATCATGAGTAAGCTTCAGAGTGATGCACTGAGAGAGGC
CGTCTCTAGTATTGTGCAATACTCTAAGGAGACAAAGAAGAGGAACTTCA
CCGAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAG
GACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAA
GATGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGA
AGATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAG
AACAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGC
ATCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCA
ACAAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAG
TCCAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGT
GCTTTGCATGGGAGTTGCTGTTGGAAACCTTTCAATGGAGGAGAAGCAGA
TCTTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAG
AAAAACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCC
TTCAAACCGCATCTTTTAAAAATTCTGCTTTATGTTGGAGTTTTGTAGGG
ANNNCCTAGTGTGATCTTATTATACCCAAAATGTCTTTCTTTGAATGGTC
ACAACCTGCAATTTTCTTTTTCTTTTTCTTTTTCTTTTC
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