CK934501

Overview
NameCK934501
Unique NameCK934501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:18..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_PYRFU (50S ribosomal protein L1P OS=Pyrococcus furiosus GN=rpl1p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 58/209 (27.75%), Postives = 103/209 (49.28%), Query Frame = 3
Query:   93 REAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            ++ V ++ +     K RNFT+++E+ + LK+ D ++ + RF   V LPH     +K+ ++ D    E A K+GLD +                     Y  F+A   ++ +I R LG  L    K P +V      L   V + K TV+ QLK    +   VG   M +++I +N++  +N ++  L++    V+ +Y+K+TMGP+ +I
Sbjct:    6 QKIVKAVKEAKARAKPRNFTQSVEVAVNLKDIDLKRPENRFKLEVVLPHGRGKDVKIAVIADGAVAEAARKLGLDVISSAELEEIASSPRQARKLAKKYDFFIAEAPLMPKIGRYLGRYLGPRNKMPVVVPPTLTDLTPIVEKLKKTVRIQLKNNPVVHAPVGTEKMSDEEIAENIEAVLNAIIGKLERGESQVKSVYVKTTMGPAVKI 214          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METB6 (50S ribosomal protein L1P OS=Methanoregula boonei (strain 6A8) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.649e-17
Identity = 58/208 (27.88%), Postives = 104/208 (50.00%), Query Frame = 3
Query:   96 EAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            EAV++ ++   +  KR F+E+I++ I LKN D  + K R   ++ LP+    K  +C++G    V +A+   +D  +  +                  Y  FLA  +V+ Q+ R LGP L   G+ P  +  Q  +   V   + +VK + K        VG+ +M  +Q+ +N+   +  + S+L++   NVR +++K+TMGPS R+
Sbjct:    9 EAVTTAIE---KAPKRKFSESIDITINLKNIDMAQPKNRIDETILLPNGTGEKTGICVIGRGDIVTQAKDAKVDLILGPDEVERLGGAPREARRVASSYKYFLAETAVMPQVGRFLGPRLGPRGRMPMPIPGQTDIRPIVERLRNSVKIRTKDKTVFSTKVGSTAMTPEQVSENIDAILKRVESVLEQGHLNVRSVFVKTTMGPSVRL 213          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METHJ (50S ribosomal protein L1P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.184e-17
Identity = 54/206 (26.21%), Postives = 100/206 (48.54%), Query Frame = 3
Query:  102 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            + ++ +  ++  +R FTE++++ I LKN D  + K R   ++ LPH     +K+ +LG    V +A + G++  M  E                  +  FLA   V+  + R LGP L   G+ P  +     +   V   + +VK + K  +   + VG  +M E++I +N+   +  ++S L+     VR +Y+K+TMGPS ++
Sbjct:    8 IDALKKAKEQAPERKFTESVDMTINLKNIDMSQPKNRIDETILLPHGNGRVVKIAVLGSGDIVTQARESGVELIMGPEEIERLGGAPREARKIASEHQFFLAETQVMSLVGRWLGPRLGPRGRMPQPIPAGTDIRPIVERLRKSVKIRTKDKMSFSLKVGTTAMSEEEIAENIDAVLKRILSKLEMGDFQVRSVYIKTTMGPSVKV 213          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METKA (50S ribosomal protein L1P OS=Methanopyrus kandleri GN=rpl1p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.062e-16
Identity = 50/215 (23.26%), Postives = 98/215 (45.58%), Query Frame = 3
Query:   75 LQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRIF 716
            +  + L E +  +V+YS     R F ET+++ + +K  D     +R    V LPH     + VC++ + +   EAE+ G   ++ E                  +  F A   ++  + R+LGP L   GK    V     + + +     T + +++    +   +G  +ME +Q+ +N    +  + S L+K+W  +  +Y+K+TMGP+ R++
Sbjct:    3 ITEEDLIEPLRKVVEYSPP---RRFLETVDMIVNVKGVDLSDPSQRIDKEVVLPHGRGKPVNVCVIAEGEMAREAEEAGATVINREKLEELAENVREAKKIARRHEFFYAQVDLMPDVGRVLGPVLGPRGKMAKPVPPNADIRALIERAHRTARVRMRDQPVIHTVIGARNMEPEQLAENAMAVLREITSELEKSWAQIDSVYVKTTMGPAERVY 214          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_UNCMA (50S ribosomal protein L1P OS=Uncultured methanogenic archaeon RC-I GN=rpl1p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.305e-16
Identity = 56/211 (26.54%), Postives = 98/211 (46.45%), Query Frame = 3
Query:   87 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            A +E V ++ +      KRNF+E+++L I LKN D  + K R    + LP      +KV +    +    AEK G DY+   E                   + F+A  + +  I + LG  L   GK P  +  Q  + + +   K ++K + K  L     +G  +M  ++I +N+   +  L + L+K  QN+  +Y+K+TMGP+ ++
Sbjct:    2 ARKETVEAVKKALASRPKRNFSESVDLAINLKNIDMSQPKNRVDEDIILPSGLGKTIKVAVFAKGEVAVNAEKAGADYVFPPEEIEKLGADKPRAKKLASEVNFFIAETAYMPTIGKRLGTVLGPRGKMPAPLPPQADVTALITRQKKSIKIRSKDRLTFHATIGTETMTPEEIAENIDAIIKRLETKLEKGKQNIHAIYVKTTMGPAVKV 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METST (50S ribosomal protein L1P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.543e-15
Identity = 54/213 (25.35%), Postives = 104/213 (48.83%), Query Frame = 3
Query:   81 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            +  + EAV  +++   E+K RNFT++I++ I + + D  K + R    V LP+     +K+  + + +   +AE+ G D + + E                  Y  F+A   ++  + R LGP L    K P  +    + E+ +   ++T+K ++K    +   VG+  M E Q+ +N+   ++ L   L+K  + ++ +YLK+TMGP  R+
Sbjct:    2 TQVIEEAVKKVLE---ESKPRNFTQSIDVVITINDLDINKPENRLDEEVLLPNGRGKDVKIAFIAEGELAYQAEQAGADLVINKEKLEELGKNRPEAKKLANSYDFFVAQTDLMPTVGRFLGPVLGPRKKMPKPIPASANPETILGRLRSTIKIRVKDQPIIQSIVGSEDMTEAQVAENIDAIMDVLDRNLEKGSKQIKAMYLKTTMGPVTRV 211          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METJA (50S ribosomal protein L1P OS=Methanocaldococcus jannaschii GN=rpl1p PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.543e-15
Identity = 57/209 (27.27%), Postives = 97/209 (46.41%), Query Frame = 3
Query:   93 REAVSSIVQYSKE-TKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            REA+   V+ ++E  K RNFT++ E    LK  D +K + R    V LPH    + K+ ++G     ++AE++GL  +  E                  +  F+A   ++  I R +G  L   GK P  V    +++  V   K TV    +      V VGN  M ++QI  N++  +N +    +K   +++  Y+K TMGP+ ++
Sbjct:    3 REALLQAVKEARELAKPRNFTQSFEFIATLKEIDMRKPENRIKTEVVLPHGRGKEAKIAVIGTGDLAKQAEELGLTVIRKEEIEELGKNKRKLRKIAKAHDFFIAQADLMPLIGRYMGVILGPRGKMPKPVPANANIKPLVERLKKTVVINTRDKPYFQVLVGNEKMTDEQIVDNIEAVLNVVAKKYEKGLYHIKDAYVKLTMGPAVKV 211          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METLZ (50S ribosomal protein L1P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.307e-14
Identity = 55/208 (26.44%), Postives = 98/208 (47.12%), Query Frame = 3
Query:   96 EAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            + ++++     +  +R F E+I++ I LK+ D  + K R   ++ LP     K K+ +LG    V +A   G+D +   +                  Y  FLA  +V+  + R LG  L   GK P  +   + +   V   + +VK + K  L M V VGN  M  +++ +N+   V  +V  L+    N+R +Y+K+TMGP+ ++
Sbjct:    6 QIINAVTAAITQAPERKFQESIDITINLKHVDMAQPKNRIDETILLPQAIGVK-KIAVLGKGDIVSQARNAGVDLIIGPDEIERLGGVPREARKMAGQYDFFLAETAVMPLVGRWLGQRLGPRGKMPQPIPPTQDITPIVERLRNSVKIRSKDRLNMSVKVGNTGMTVEEVSENIDAVVKRVVGRLESGELNIRSVYVKTTMGPAVKV 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_NANEQ (50S ribosomal protein L1P OS=Nanoarchaeum equitans GN=rpl1p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.229e-14
Identity = 64/211 (30.33%), Postives = 96/211 (45.50%), Query Frame = 3
Query:  114 VQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ-----------ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            V+ ++E KKR FT+T EL   LKN D +K  R S  + LP     KM +  +   ++ E AEK   D +                     YH    ++ + +    LLG  L   GK P     Q           E+L  K+N T   V+  +KK +  GV +G   ME++ I +N    +N ++S L +  QN+  +YLK TMGP+ R+
Sbjct:    7 VKKAREGKKRRFTQTFELIFNLKNVDLRK-YRLSTYIVLPRGRGKKMPILAIVGPENKELAEKY-FDIVLTREDLKQLDKRTAKKLAKRHYHVVAQADLMPELGKSLLGRFLGIRGKMPNPKAGQILPPNLNEKMLEALREKLNNT---VRVNVKKHVTFGVPIGTEDMEDEAIAENADTVINEIISQLPQGKQNIDSVYLKLTMGPAVRV 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METTP (50S ribosomal protein L1P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.802e-14
Identity = 56/210 (26.67%), Postives = 92/210 (43.81%), Query Frame = 3
Query:   90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            + EAV   V    E   R F E+++L I L N D  Q   R    V LPH      ++ +        +A+  G DY+   E                  Y  F+A    +  I + LGP L K GK PT +     +   ++  K  V+ + +      +AVG   M+ +Q+ +N++  +  L   LK   +N++ +Y+K+TMGP+ R+
Sbjct:    5 IEEAVKKAVS---EAPPRGFKESVDLAINLHNIDLTQPGNRVDTEVILPHGRGRPNRIAVFAAGDTALKAKAAGADYVISPEELKLLGENRKNARKLADEYDFFIAETQFMPVIGKTLGPILGKRGKMPTPLPPNADVAQMISRLKNIVRIRSRDRPTFHIAVGRRDMDARQLAENIESVITKLEQTLKDGRRNLKSVYVKTTMGPAVRV 211          
The following BLAST results are available for this feature:
BLAST of CK934501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL1_PYRFU1.142e-1827.7550S ribosomal protein L1P OS=Pyrococcus furiosus G... [more]
RL1_METB61.649e-1727.8850S ribosomal protein L1P OS=Methanoregula boonei ... [more]
RL1_METHJ8.184e-1726.2150S ribosomal protein L1P OS=Methanospirillum hung... [more]
RL1_METKA4.062e-1623.2650S ribosomal protein L1P OS=Methanopyrus kandleri... [more]
RL1_UNCMA5.305e-1626.5450S ribosomal protein L1P OS=Uncultured methanogen... [more]
RL1_METST1.543e-1525.3550S ribosomal protein L1P OS=Methanosphaera stadtm... [more]
RL1_METJA1.543e-1527.2750S ribosomal protein L1P OS=Methanocaldococcus ja... [more]
RL1_METLZ1.307e-1426.4450S ribosomal protein L1P OS=Methanocorpusculum la... [more]
RL1_NANEQ2.229e-1430.3350S ribosomal protein L1P OS=Nanoarchaeum equitans... [more]
RL1_METTP3.802e-1426.6750S ribosomal protein L1P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934501 ID=CK934501; Name=CK934501; organism=Citrus sinensis; type=EST; length=839bp
GGGGAGGGTTTCTTTTTCGTATTTGAAGAAAAAAAATTCTGTAAAGGGCT
CCAAGCGCTTCAATCATGAGTAAGCTTCAGAGTGATGCACTGAGAGAGGC
CGTCTCTAGTATTGTGCAATACTCTAAGGAGACAAAGAAGAGGAACTTCA
CCGAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAG
GACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAA
GATGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGA
AGATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAG
AACAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGC
ATCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCA
ACAAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAG
TCCAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGT
GCTTTGCATGGGAGTTGCTGTTGGAAACCTTTCAATGGAGGAGAAGCAGA
TCTTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAG
AAAAACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCC
TTCAAACCGCATCTTTTAAAAATTCTGCTTTATGTTGGAGTTTTGTAGGG
ANNNCCTAGTGTGATCTTATTATACCCAAAATGTCTTTCTTTGAATGGTC
ACAACCTGCAATTTTCTTTTTCTTTTTCTTTTTCTTTTC
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