CK934501

Overview
NameCK934501
Unique NameCK934501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:18..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METMJ (50S ribosomal protein L1P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 53/211 (25.12%), Postives = 102/211 (48.34%), Query Frame = 3
Query:   87 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            +++EAV + +  + E   R F E++++ + L+N D  + K R   ++ LP+     +K+ +LG    V +A+++ +D +   E                  Y  FLA  +++  + R LG  L   G+ P  V     +   V   +++VK + K        VG   ME +QI +N+   ++ + S+L+    N+  +Y+K+TMGP+ R+
Sbjct:    6 SIQEAVKTALSKAPE---RKFKESVDITVNLRNIDMSQPKNRIDETIHLPN-GFDNVKIAVLGKGDIVTQAKEVNVDLIIGPEEIERLGGEPREARKVAGEYRFFLAETAMMPLVGRYLGVRLGPRGRMPMPVPQGMDIRPIVQRLRSSVKIRTKDKKVFHTKVGTSGMEPEQIAENIDAVLHRVESVLESGTMNIHSVYVKTTMGPAVRV 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METS3 (50S ribosomal protein L1P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl1p PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.106e-13
Identity = 47/212 (22.17%), Postives = 107/212 (50.47%), Query Frame = 3
Query:   93 REAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIG----LDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            +E + ++ +  +++K RNFT+++++ + +++ D +K + RF+  V LP+    ++K+ ++ D + + +A+  G    ++  D+E                     F+A   ++  + R LGP L    K P  V     L+  +   ++TVK  +K+   + + VG+  M ++ + +N++  +  L   L K    ++ +++K+TMGP  R+
Sbjct:    3 QEVLEAVKEAKEQSKPRNFTQSVDMIVNIRDLDVKKPENRFNEEVTLPNGRGKEVKIGVIADGELIVQAKDAGVALVINKADLEELGKDRKAAKKAANSVDF---FIAQADMMPLVGRFLGPILGPRNKMPKPVPASIKLDPLLERLQSTVKVGIKQQPAIQIIVGSQDMSDEDLAENIETVLTVLDRHLDKGRNQIKSMFIKTTMGPIVRV 211          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_NATPD (50S ribosomal protein L1P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 56/209 (26.79%), Postives = 94/209 (44.98%), Query Frame = 3
Query:   81 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704
            +D++ +AVS  +  S E   RNF ET++L I L++ D    + R   S+ LP        + +  + +    AE +  D +D +                     F+A   +++ I R LG  L   GK PT +   + +   VN  K TV+ +  +       VG   M+   I  NV + +  L + L+K  QN+  +Y+K+TMGP+
Sbjct:    2 ADSIEDAVSRAMSESPE---RNFRETVDLAINLRDLDLADPNNRVDESIVLPSGTGQDTHIVVFAEGETALRAEDVADDVLDSDDLEDLGDDDNAAKDLADETDFFIAEADLMQDIGRYLGTVLGPRGKMPTPLQPDDDVVETVNRMKNTVQVRSGERRTFHTRVGAEDMDADAIADNVDVILRRLFTDLEKGPQNIDTVYVKTTMGPA 207          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METTH (50S ribosomal protein L1P OS=Methanobacterium thermoautotrophicum GN=rpl1p PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 49/211 (23.22%), Postives = 105/211 (49.76%), Query Frame = 3
Query:   90 LREAVSSIVQYSKE-TKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXX-YHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            +++ +   V+ +KE ++ RNFT+++++ + +K+ D  K + RF   V LP+     +K+ ++ D +   +A+  G D +  +                   Y  F+A   ++  + R +GP L    K P  V    + E  +N+ + TVK ++K    +   VG   M+++++ +N++  +  +   L+K    ++ +Y+K+TMGP  R+
Sbjct:    1 MQQEIMEAVKKAKELSRPRNFTQSMDVILNIKDLDVNKPENRFDEEVSLPNGRGKDVKIAVIADGELALQAKNAGADLVITKDELEELGKNRKEAKKLANQYEFFVAQADMMPLVGRFMGPVLGPRKKMPKPVPATINPEPILNKLRDTVKVRIKDQPVVHTVVGTEDMDDEKLAENIEAVLQTIDRKLEKGRNQLKSMYVKTTMGPVVRV 211          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METTL (50S ribosomal protein L1P OS=Methanococcus thermolithotrophicus GN=rpl1p PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.490e-13
Identity = 53/209 (25.36%), Postives = 94/209 (44.98%), Query Frame = 3
Query:   93 REAVSSIVQYSKE-TKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            RE +   V+ ++   K RNFT++++L I LK  D  + + R    V LP+    + K+ ++       +AE++GL  +  +                  +  F+A   ++  + + LGP L   GK P  V    +L   V   K TV    +      V VGN  M ++++ +N++  +N +    +K   +V+  Y K TMGP  +I
Sbjct:    3 RENILKAVKEARSLAKPRNFTQSLDLIINLKELDLSRPENRLKEQVVLPNGRGKEPKIAVIAKGDLAAQAEEMGLTVIRQDELEELGKNKKMAKKIANEHDFFIAQADMMPLVGKTLGPVLGPRGKMPQPVPANANLTPLVERLKKTVLINTRDKPLFHVLVGNEKMSDEELAENIEAILNTVSRKYEKGLYHVKSAYTKLTMGPPAQI 211          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METBU (50S ribosomal protein L1P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.170e-13
Identity = 52/203 (25.62%), Postives = 96/203 (47.29%), Query Frame = 3
Query:  111 IVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDY-MDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            + Q  + + +R F+E++++ I LKN D  + K R    + LP+     MK+ +    +    A+  G DY +  E                     F+A    + QI + LG  L   GK P  +T  +++   +N TK +V+ + K  L   V+VG   M+ +++ +N++  +  L   L+K   N++ +Y+ +TMG S R+
Sbjct:   10 VKQLIEGSPERKFSESLDIAINLKNLDMSQPKNRVDEEIILPNGLGKTMKIAVFAKGEVGLNAKDAGCDYILTEEDIKELGEDKSKARSLANECDFFIAEVQYMAQIGKALGAILGPRGKMPVPLTPDKNVADLINSTKNSVRIRSKDKLTFHVSVGRRDMDVEKLAENIETVLGRLEHSLEKGKHNLKSVYVTTTMGNSVRL 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_CENSY (50S ribosomal protein L1P OS=Cenarchaeum symbiosum GN=rpl1p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.170e-13
Identity = 50/200 (25.00%), Postives = 94/200 (47.00%), Query Frame = 3
Query:  102 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM-DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 698
            V+ +++ +KE  KRNFT+T+E  +  K+ D +K    + +V+LP    P   VC+L        A+    D + D +G                 Y  FLA   ++  + ++LG  L   GK PT V     +ES +   +++V+ + +  L +   +G+ +M++  +  N       +   L +  +NVR + +K++MG
Sbjct:    7 VARMIKKAKEGDKRNFTQTLEFIMVFKDIDIKKGFAINETVQLPKTSSPST-VCVLASGDMGVRAKNAKADMVVDADGLEKLGTNKRESRKFINRYDFFLADTQLMPVVGKVLGQILGPRGKMPTPVAFNAPIESFLERFRSSVRVRARASLSLSCKIGDETMDDADLVANAMAVYGTVEKKLPQGSKNVRQIMVKTSMG 205          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METAC (50S ribosomal protein L1P OS=Methanosarcina acetivorans GN=rpl1p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 59/209 (28.23%), Postives = 96/209 (45.93%), Query Frame = 3
Query:   96 EAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM--DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            EAV  +V+   E+ KRNF+E+++L I LKN D  + K R    V LPH    ++K+ +        +A+  G  Y+  DVE                     F+A    +  I + LG  L   GK P  +   + +   +   +  VK + K  L   VAVG   M  + + +N++  ++ L  +L K   N+R +Y+ +TMG S R+
Sbjct:    8 EAVKKVVE---ESPKRNFSESVDLAINLKNLDMNQPKNRVDEEVILPHGLGKELKIGVFAKGDVGLKAKAAGAAYVISDVE-LEELAADKNRARVLANECDLFIAETQFMPIIGKNLGIVLGPRGKMPIPLMPNKDVGELIQSKQNAVKLRSKDRLTFHVAVGRRDMNPEDLAENIETIMSRLERVLDKGKHNLRTVYVTTTMGKSERV 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METMA (50S ribosomal protein L1P OS=Methanosarcina mazei GN=rpl1p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 58/209 (27.75%), Postives = 95/209 (45.45%), Query Frame = 3
Query:   96 EAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM--DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            EAV  +++   E+ KRNF+E+++L I LKN D  + K R    V LPH    ++K+ +         A+  G  Y+  DVE                     F+A    +  I + LG  L   GK P  +   + +   +   +  VK + K  L   VAVG  +M    + +N++  ++ L  +L K   N+R +Y+ +TMG S R+
Sbjct:    8 EAVKKVIE---ESPKRNFSESVDLAINLKNLDMNQPKNRVDEEVILPHGLGKELKIGVFAKGDVGLRAKAAGAAYVISDVE-LEELAADKNKARVLANECDLFIAETQFMPIIGKNLGIVLGPRGKMPIPLMPNKDIGELIQSKQNAVKLRSKDRLTFHVAVGRRNMNPDDLSENIETIMSRLERVLDKGKHNLRSVYVTTTMGKSERV 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_THEAC (50S ribosomal protein L1P OS=Thermoplasma acidophilum GN=rpl1p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 50/204 (24.51%), Postives = 91/204 (44.61%), Query Frame = 3
Query:   90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMG 698
            ++ AVS I + S +   R F E++E+ + LK+ D    K R +  + LP+     +K+ + G  +   +A  +       E                   + F+A  +++  I + LG  L   GK P  +   +     +   K TVK + +  L   V VG  SM+  +I +N+   +N +   L++   N+R +Y+K+TMG
Sbjct:    6 VKRAVSEIKEKSPQ---RKFEESVEIAVNLKDVDMSNPKNRINEEILLPNGRGKDVKIAVFGSDELKSKARGVADFVFGAEDISKFAEDKKAFKKIVNQAYFFIAEATLMANIGKSLGQVLGPRGKMPRPIPPGQDPAPLIKNLKNTVKARSRNALTFHVPVGTRSMDADKISENIMTVINRITGKLERGASNIRSIYVKTTMG 206          
The following BLAST results are available for this feature:
BLAST of CK934501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL1_METMJ8.469e-1425.1250S ribosomal protein L1P OS=Methanoculleus marisn... [more]
RL1_METS31.106e-1322.1750S ribosomal protein L1P OS=Methanobrevibacter sm... [more]
RL1_NATPD1.887e-1326.7950S ribosomal protein L1P OS=Natronomonas pharaoni... [more]
RL1_METTH1.887e-1323.2250S ribosomal protein L1P OS=Methanobacterium ther... [more]
RL1_METTL5.490e-1325.3650S ribosomal protein L1P OS=Methanococcus thermol... [more]
RL1_METBU7.170e-1325.6250S ribosomal protein L1P OS=Methanococcoides burt... [more]
RL1_CENSY7.170e-1325.0050S ribosomal protein L1P OS=Cenarchaeum symbiosum... [more]
RL1_METAC1.597e-1228.2350S ribosomal protein L1P OS=Methanosarcina acetiv... [more]
RL1_METMA2.725e-1227.7550S ribosomal protein L1P OS=Methanosarcina mazei ... [more]
RL1_THEAC3.558e-1224.5150S ribosomal protein L1P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934501 ID=CK934501; Name=CK934501; organism=Citrus sinensis; type=EST; length=839bp
GGGGAGGGTTTCTTTTTCGTATTTGAAGAAAAAAAATTCTGTAAAGGGCT
CCAAGCGCTTCAATCATGAGTAAGCTTCAGAGTGATGCACTGAGAGAGGC
CGTCTCTAGTATTGTGCAATACTCTAAGGAGACAAAGAAGAGGAACTTCA
CCGAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAG
GACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAA
GATGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGA
AGATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAG
AACAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGC
ATCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCA
ACAAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAG
TCCAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGT
GCTTTGCATGGGAGTTGCTGTTGGAAACCTTTCAATGGAGGAGAAGCAGA
TCTTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAG
AAAAACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCC
TTCAAACCGCATCTTTTAAAAATTCTGCTTTATGTTGGAGTTTTGTAGGG
ANNNCCTAGTGTGATCTTATTATACCCAAAATGTCTTTCTTTGAATGGTC
ACAACCTGCAATTTTCTTTTTCTTTTTCTTTTTCTTTTC
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