CK934501

Overview
NameCK934501
Unique NameCK934501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4200 contig Csv1_Contig4200:18..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_HALWD (50S ribosomal protein L1P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 51/209 (24.40%), Postives = 92/209 (44.02%), Query Frame = 3
Query:   81 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704
            +D + +AVS  +    E   RNF ET++L + L++ D      R   SV LP     + ++ +    +    AE +    +  +                     F+A   +++ I R LG  L   GK PT +   + +   VN  + TV+ + ++       VG   M+ ++I  NV + +  L + L+K   N+  +Y+K+TMGP+
Sbjct:    2 ADTITDAVSRAID---EAPTRNFRETVDLAVNLRDLDLNDPSNRVDESVVLPAGTGQETQIVVFASGETALRAEDVADQVLSGDELEELGDDDDAAKDLADEIDFFVAEAGMMQDIGRFLGTILGPRGKMPTPLQPDDDVVETVNRMQNTVQIRSRERRTFHTRVGAQDMDSEEIADNVDVIIRRLEATLEKGPLNIDSMYVKTTMGPA 207          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_HALLT (50S ribosomal protein L1P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.070e-12
Identity = 51/212 (24.06%), Postives = 95/212 (44.81%), Query Frame = 3
Query:   81 SDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            +D ++EAV+  +  + E   RNF ET+++ I L++ D      R   SV LP     + ++ +  + +    A+++    +D +                     F+A  ++++ I R LG  L   GK PT +   + +   VN  K TV+ + +        VG   M    I  N+ + +  L + L+K   N+  +Y+K+TMGP+  +
Sbjct:    2 ADTIQEAVTLALDDAPE---RNFRETVDIAINLRDLDLNDPSNRIDESVVLPAGTGQETQIVVFAEGETAVRAQEVADQVLDSDDLEDLGDDDDRAKDLADETDFFVAEANLMQDIGRYLGTVLGPRGKMPTPLQPDDDIVDTVNRMKNTVQLRSRDRRTFHTRVGAEDMGPDAISDNIDVIIRRLEASLEKGPLNIDGIYVKTTMGPAKEV 210          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_METBF (50S ribosomal protein L1P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 57/212 (26.89%), Postives = 96/212 (45.28%), Query Frame = 3
Query:   87 ALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYM--DVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            ++ EAV  +++   E+ KRNF+E+++L I LKN D    K R    V LPH    ++K+ +         A+  G  Y+  DVE                     F+A    +  I + LG  L   GK P  +   + +   +   +  ++ + K  L   V VG  +M    + +NV++ V+ L  +L K   N+R +Y+ +TMG S R+
Sbjct:    5 SILEAVKKVLE---ESPKRNFSESVDLAINLKNLDMNLPKNRVDEEVILPHGLGKELKIGVFAKGDVGLRAKAAGAAYVISDVE-LDELASDKTRARTLANECDLFIAETQFMPTIGKNLGIVLGPRGKMPIPLLPNKDIGELIQSKQNAIRLRSKDKLTFHVPVGRRTMSPDDLAENVEIIVSRLERVLDKGRHNLRTVYVTTTMGKSERV 212          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_META3 (50S ribosomal protein L1P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.927e-12
Identity = 46/202 (22.77%), Postives = 89/202 (44.06%), Query Frame = 3
Query:  102 VSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704
            ++++ +  K  K RNF ++++L + LK  D  + + R   +V LPH    + K+ ++       +A+++GL  +  E                     F+A   ++  + + LGP L   GK P  V    +L+  V   K TV    +      V  G   + ++++ +N+   ++ +    +K   +V+  Y K TMGPS
Sbjct:    7 LNAVKEARKNAKPRNFNQSVDLIVNLKELDFSRPENRIKQNVILPHGRGKESKIAVIAKGDLAAQADEMGLTVIRQEELEELGKNKKNAKKLANENDFFIAQADMMPLVGKTLGPVLGPRGKMPQPVPANANLKPLVERFKKTVSINTRDKPSFKVLAGTEKLNDEELAENIDAILSTVARQYEKGLYHVKNAYTKLTMGPS 208          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_ARCFU (50S ribosomal protein L1P OS=Archaeoglobus fulgidus GN=rpl1p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 51/206 (24.76%), Postives = 92/206 (44.66%), Query Frame = 3
Query:  102 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQK-DKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDV-EGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            V SI +  K  KKR F ET+E+ + L+N D +K + R    V LPH      K+ +        +A++ G D +   E                     F+A   ++ +I R LGP L   GK P  +      +  ++  + +VK + +        +G+ +M+ ++I +N    +  + +  +   Q V+ +Y+K TMGP+ R+
Sbjct:    9 VKSIEEAIKNGKKRRFVETVEMAVNLRNVDMKKPENRIDTVVNLPHGLGKPRKIGVFAKGDTALKAKEAGADVVITPEEIDELAKDKRRAKKLANSIDFFIAEAPLMPEIGRKLGPVLGPRGKIPQPIPPLADPKPFIDRLRNSVKIRTRDKTTFHAPIGSENMDVEKIAENAMEILKVVENKYENPTQVVKSVYVKKTMGPAVRV 214          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_ENCCU (60S ribosomal protein L1 OS=Encephalitozoon cuniculi GN=RPL1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.306e-11
Identity = 50/211 (23.70%), Postives = 96/211 (45.50%), Query Frame = 3
Query:  102 VSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIP-RLLGPGLNK---------AGKFPTLVTHQESLESKVNETKATVKFQLKKVLCM-GVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGP 701
            +  I+   KE++      TI++Q+ LK +DP+KD + S  + LP+  R   K  ++ D  HV+      L Y+ ++                         ESV+K+    +L PG NK          GK P ++ + + + +     K + K +++    +    VG+  M+ + I++N+++ +  LVS LK   QN++ + +K+   P
Sbjct:   18 IIGIINQLKESEDPEKIVTIQIQVNLKGFDPRKDNKVSKDMVLPYRVRSLDKTIVIADEAHVKVCIDANLPYVPIDEISGDDKKD--------------IRESVLKKNKFFILCPGYNKIYQLKNILRCGKTPHILRNGDDINAVFETGKKSCKLRIQDDFSVTSFTVGHTGMDSEHIYENIKVGMGLLVSYLKNGSQNLKGVMIKTDQSP 214          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_KORCO (50S ribosomal protein L1P OS=Korarchaeum cryptofilum (strain OPF8) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.012e-11
Identity = 52/225 (23.11%), Postives = 113/225 (50.22%), Query Frame = 3
Query:   66 MSKLQSDALREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK--RFSGSVKLPHIPRP-KMKVCMLGDAQHVEEAEKIGLD-YMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQ--ESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQN---VRCLYLKSTMGPSNRI 713
            MSKL +++  +++  I +  + + KR F E ++L + L+  D ++D   + +  V+LPH PR  K KV ++G  + + +A++ G D  ++ E                  Y  F+A   V+ +I + +GP L    K P  +       L   + + + +V+ + K    +   VG+  M+ ++I +N++     ++S +++ +++   +  +Y+K+TMGP+  +
Sbjct:    1 MSKLLTES--DSLKVIRRILEGSPKRRFNEAVDLVVVLRGIDLKRDPNAKINEVVELPHSPRNRKTKVAVIGKGEFLSKAKEAGADRVLEPEEIEAIAANKRALKKLANEYDFFIAQADVLPKIVKYIGPVLGPRNKMPINLPAMAVSQLPDLIEKLRRSVRIRTKDQPIIHTKVGSRDMKPEEIVENIRA----VLSAIERKYEDPSKISRVYVKTTMGPAEEL 219          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_THEVO (50S ribosomal protein L1P OS=Thermoplasma volcanium GN=rpl1p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.934e-11
Identity = 50/209 (23.92%), Postives = 97/209 (46.41%), Query Frame = 3
Query:   90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYDPQKDK-RFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPSNRI 713
            + +AV ++ Q S +   R F E++E+ I LK+ D    K R +  + LP+     +KV + G  +   +A+ +       E                   + F+A  +++  I + LG  L   GK P  +   +     +   K TVK + +  L + V VG  SM+ ++I +N+   +N +   L++   N++ +Y+K+TMG + ++
Sbjct:    6 ISKAVEAVKQSSPQ---RKFEESVEIAINLKDIDMTNPKNRINEEILLPNGRGKDVKVVIFGSEELKAKAKGVADYIFGPEDISKFAEDKKAFKKIVNDAYFFIAEATLMANIGKSLGQVLGPRGKMPRPIPPGQDPVPLIKALKNTVKARSRNSLTLHVPVGTRSMDTQKISENIMAILNRITGKLERGHSNIKNVYVKTTMGKAVQV 211          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_HALSA (50S ribosomal protein L1P OS=Halobacterium salinarium GN=rpl1p PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 50/206 (24.27%), Postives = 91/206 (44.17%), Query Frame = 3
Query:   90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704
            + EAV+  ++   +  +RNF ET++L + L++ D     +R    V LP     + ++ +  D +    A+ +  D +D +                     F+A   +++ I   LG  L   GK PT +   + +   VN  K TV+ + +        VG   M  + I  N+ + +  L + L+K   NV  +Y+K+TMGP+
Sbjct:    6 IEEAVARALE---DAPQRNFRETVDLAVNLRDLDLNDPSQRVDEGVVLPSGTGQETQIVVFADGETAVRADDVADDVLDEDDLSDLADDTDAAKDLADETDFFVAEAPMMQDIAGALGQVLGPRGKMPTPLQPDDDVVDTVNRMKNTVQIRSRDRRTFHTRVGAEDMSAEDIASNIDVIMRRLHANLEKGPLNVDSVYVKTTMGPA 208          
BLAST of CK934501 vs. ExPASy Swiss-Prot
Match: RL1_HALS3 (50S ribosomal protein L1P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl1p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.138e-11
Identity = 50/206 (24.27%), Postives = 91/206 (44.17%), Query Frame = 3
Query:   90 LREAVSSIVQYSKETKKRNFTETIELQIGLKNYD-PQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVEGXXXXXXXXXXXXXXXXXYHAFLASESVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKATVKFQLKKVLCMGVAVGNLSMEEKQIFQNVQMSVNFLVSLLKKNWQNVRCLYLKSTMGPS 704
            + EAV+  ++   +  +RNF ET++L + L++ D     +R    V LP     + ++ +  D +    A+ +  D +D +                     F+A   +++ I   LG  L   GK PT +   + +   VN  K TV+ + +        VG   M  + I  N+ + +  L + L+K   NV  +Y+K+TMGP+
Sbjct:    6 IEEAVARALE---DAPQRNFRETVDLAVNLRDLDLNDPSQRVDEGVVLPSGTGQETQIVVFADGETAVRADDVADDVLDEDDLSDLADDTDAAKDLADETDFFVAEAPMMQDIAGALGQVLGPRGKMPTPLQPDDDVVDTVNRMKNTVQIRSRDRRTFHTRVGAEDMSAEDIASNIDVIMRRLHANLEKGPLNVDSVYVKTTMGPA 208          
The following BLAST results are available for this feature:
BLAST of CK934501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RL1_HALWD4.647e-1224.4050S ribosomal protein L1P OS=Haloquadratum walsbyi... [more]
RL1_HALLT6.070e-1224.0650S ribosomal protein L1P OS=Halorubrum lacusprofu... [more]
RL1_METBF7.927e-1226.8950S ribosomal protein L1P OS=Methanosarcina barker... [more]
RL1_META37.927e-1222.7750S ribosomal protein L1P OS=Methanococcus aeolicu... [more]
RL1_ARCFU1.035e-1124.7650S ribosomal protein L1P OS=Archaeoglobus fulgidu... [more]
RL1_ENCCU2.306e-1123.7060S ribosomal protein L1 OS=Encephalitozoon cunicu... [more]
RL1_KORCO3.012e-1123.1150S ribosomal protein L1P OS=Korarchaeum cryptofil... [more]
RL1_THEVO3.934e-1123.9250S ribosomal protein L1P OS=Thermoplasma volcaniu... [more]
RL1_HALSA5.138e-1124.2750S ribosomal protein L1P OS=Halobacterium salinar... [more]
RL1_HALS35.138e-1124.2750S ribosomal protein L1P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_D09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934501 ID=CK934501; Name=CK934501; organism=Citrus sinensis; type=EST; length=839bp
GGGGAGGGTTTCTTTTTCGTATTTGAAGAAAAAAAATTCTGTAAAGGGCT
CCAAGCGCTTCAATCATGAGTAAGCTTCAGAGTGATGCACTGAGAGAGGC
CGTCTCTAGTATTGTGCAATACTCTAAGGAGACAAAGAAGAGGAACTTCA
CCGAGACTATTGAGCTTCAGATTGGTCTCAAGAACTATGATCCACAAAAG
GACAAGCGTTTCAGTGGCTCTGTTAAGTTGCCTCACATTCCCCGCCCCAA
GATGAAGGTCTGCATGCTTGGTGATGCTCAACATGTTGAAGAGGCCGAGA
AGATTGGTTTGGACTACATGGATGTTGAAGGATTGAAAAAATTGAACAAG
AACAAGAAATTGGTGAAGAAACTTGCCAAGAAATATCATGCTTTCTTGGC
ATCAGAGTCTGTCATCAAGCAGATTCCTCGTTTGTTGGGTCCTGGTCTCA
ACAAGGCAGGAAAGTTCCCTACCCTTGTTACTCACCAAGAATCCCTGGAG
TCCAAAGTCAACGAGACTAAGGCAACAGTGAAGTTCCAATTGAAGAAGGT
GCTTTGCATGGGAGTTGCTGTTGGAAACCTTTCAATGGAGGAGAAGCAGA
TCTTCCAGAATGTTCAAATGAGTGTTAACTTCCTTGTCTCATTGTTGAAG
AAAAACTGGCAGAATGTCAGGTGCCTCTATCTGAAGAGTACCATGGGTCC
TTCAAACCGCATCTTTTAAAAATTCTGCTTTATGTTGGAGTTTTGTAGGG
ANNNCCTAGTGTGATCTTATTATACCCAAAATGTCTTTCTTTGAATGGTC
ACAACCTGCAATTTTCTTTTTCTTTTTCTTTTTCTTTTC
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