CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEID----LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + G ++P P+ TF ++D + L NI + PTP+Q AIP+ + GR+L+A A TGSGKT AF PI+ + + +G R AL+++PTREL+SQIH E Sbjct: 150 IHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ----PTNKGFR-----ALVISPTRELASQIHRE 254
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G VPPP+ F + L I + PTP+Q A PI++ GRD++ A+TGSGKT AF P I I + ++ G P+ L+LAPTREL+ QI +E Sbjct: 376 GREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDG-----PIVLVLAPTRELALQIQEE 476
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14 Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + G+NVP PV TF E + + ++ + +PT +Q P++++GRD++ A+TGSGKT +C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 113 ITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQTE 217
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 9.102e-14 Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G ++P P+ TF E + + ++ + KPTP+Q P++++GRD++ A TGSGKT ++C P I I + +Q G P+ L+LAPTREL+ QI E Sbjct: 119 GHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDG-----PIVLVLAPTRELAVQIQTE 219
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13 Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1 Query: 469 DDIDAEQPFAEAENTGINFDAYEDIPVETS-GENVPP-----PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQI 867 D+ D EQ ++ N D+ + T G+ P P +F ++ + E L K+ KPTP+Q AIP+++ GRD++ A+TGSGKTAAF PI+ ++ ++P+ PL L+LAPTREL++QI Sbjct: 66 DEEDEEQNDDSSDEASENDDSTPTVEEATKEGQTELPSKEETPTKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLL-----EKPQ------PLFGLVLAPTRELAAQI 194
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13 Identity = 42/113 (37.17%), Postives = 70/113 (61.95%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP--LALILAPTRELSSQI 867 + +GE+ P P+ +F ++ +L L N+++ KY PTP+Q +IP + GRDL+ACA TGSGKT A+ P++ + + + +G++ AL++APT+EL+SQI Sbjct: 95 INITGEDSPLPIGSFEDLITRFNLHPYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAYSIPMV------EMLGKKKGSKDAKKGIKALVVAPTKELASQI 201
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_VANPO (ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ROK1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13 Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867 SGE++P P+ +F ++ + L N+ + +PTP+Q AIP+++ RD++ACA TGSGKT AF P+I ++ ++ Q +G LI++PT+EL++QI Sbjct: 118 SGEDIPLPIGSFEDLITRFSFDKRLLNNLILNHFTEPTPIQCEAIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVINDKDTQGLKG--------LIISPTKELANQI 217
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_ASHGO (ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii GN=ROK1 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13 Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 550 ETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 + +G + P P+ +F ++ L + L N+ + +PTP+Q AIPIS+ RD++ACA TGSGKT AF P++ ++ ++ V G + LI++PT+EL++QI DE Sbjct: 108 KVTGADAPLPIGSFEDLVTRFKLDKRLLSNLIENNFTEPTPIQCEAIPISLQNRDIVACAPTGSGKTLAFLIPLLQQVISDKAV--GTGVK-----GLIISPTKELANQIFDE 213
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH57_ARATH (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13 Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEID--LGEE--LNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864 + SG N+PPP+ +FAE+ G E + N+ + +PTP+QR AIPI ++GR+ ACA TGSGKT AF P++ + R G R A+IL+P REL++Q Sbjct: 125 IHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPS----TDGIR-----AVILSPARELAAQ 225
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13 Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 V T+GEN+P P TF L E+ + + PTP+Q PI++ RD++A A+TGSGKT + P ++ R P LILAPTREL++QI DEA Sbjct: 423 VTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI------LLRHCRNDSRNGPTVLILAPTRELATQIQDEA 527 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |