CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEID----LGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +   G ++P P+ TF ++D    +   L  NI    +  PTP+Q  AIP+ + GR+L+A A TGSGKT AF  PI+  + +       +G R     AL+++PTREL+SQIH E
Sbjct:  150 IHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDAGFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ----PTNKGFR-----ALVISPTRELASQIHRE 254          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G  VPPP+  F +      L   I    +  PTP+Q  A PI++ GRD++  A+TGSGKT AF  P I  I  +  ++   G     P+ L+LAPTREL+ QI +E
Sbjct:  376 GREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDG-----PIVLVLAPTRELALQIQEE 476          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_AJECN (ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.969e-14
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +   G+NVP PV TF E    + +   ++   + +PT +Q    P++++GRD++  A+TGSGKT  +C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  113 ITVQGKNVPRPVETFDEAGFPQYVMSEVKAQGFARPTAIQAQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQTE 217          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_CANAL (ATP-dependent RNA helicase DBP2 OS=Candida albicans GN=DBP2 PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 9.102e-14
Identity = 40/106 (37.74%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G ++P P+ TF E    + +   ++   + KPTP+Q    P++++GRD++  A TGSGKT ++C P I  I  +  +Q   G     P+ L+LAPTREL+ QI  E
Sbjct:  119 GHDIPHPITTFDEAGFPDYVLQEVKDQGFPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDG-----PIVLVLAPTRELAVQIQTE 219          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_MAGGR (ATP-dependent rRNA helicase RRP3 OS=Magnaporthe grisea GN=RRP3 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 1
Query:  469 DDIDAEQPFAEAENTGINFDAYEDIPVETS-GENVPP-----PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQI 867
            D+ D EQ    ++    N D+   +   T  G+   P     P  +F ++ + E L       K+ KPTP+Q  AIP+++ GRD++  A+TGSGKTAAF  PI+  ++     ++P+      PL  L+LAPTREL++QI
Sbjct:   66 DEEDEEQNDDSSDEASENDDSTPTVEEATKEGQTELPSKEETPTKSFRDLGIVEPLCEACEALKFKKPTPIQEQAIPLALQGRDVIGIAETGSGKTAAFALPILQSLL-----EKPQ------PLFGLVLAPTRELAAQI 194          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_YARLI (ATP-dependent RNA helicase ROK1 OS=Yarrowia lipolytica GN=ROK1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13
Identity = 42/113 (37.17%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYP--LALILAPTRELSSQI 867
            +  +GE+ P P+ +F ++    +L   L  N+++ KY  PTP+Q  +IP  + GRDL+ACA TGSGKT A+  P++      + + + +G++       AL++APT+EL+SQI
Sbjct:   95 INITGEDSPLPIGSFEDLITRFNLHPYLLANLKKNKYTDPTPIQCESIPTMLNGRDLIACAPTGSGKTMAYSIPMV------EMLGKKKGSKDAKKGIKALVVAPTKELASQI 201          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_VANPO (ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=ROK1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13
Identity = 40/108 (37.04%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            SGE++P P+ +F ++       + L  N+    + +PTP+Q  AIP+++  RD++ACA TGSGKT AF  P+I  ++ ++  Q  +G        LI++PT+EL++QI
Sbjct:  118 SGEDIPLPIGSFEDLITRFSFDKRLLNNLILNHFTEPTPIQCEAIPLALNNRDMLACAPTGSGKTLAFLIPLIQQVINDKDTQGLKG--------LIISPTKELANQI 217          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_ASHGO (ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii GN=ROK1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13
Identity = 42/113 (37.17%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  550 ETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            + +G + P P+ +F ++     L + L  N+    + +PTP+Q  AIPIS+  RD++ACA TGSGKT AF  P++  ++ ++ V    G +      LI++PT+EL++QI DE
Sbjct:  108 KVTGADAPLPIGSFEDLVTRFKLDKRLLSNLIENNFTEPTPIQCEAIPISLQNRDIVACAPTGSGKTLAFLIPLLQQVISDKAV--GTGVK-----GLIISPTKELANQIFDE 213          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH57_ARATH (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEID--LGEE--LNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            +  SG N+PPP+ +FAE+    G E  +  N+    + +PTP+QR AIPI ++GR+  ACA TGSGKT AF  P++  + R        G R     A+IL+P REL++Q
Sbjct:  125 IHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPS----TDGIR-----AVILSPARELAAQ 225          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.189e-13
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            V T+GEN+P P  TF    L  E+   +    +  PTP+Q    PI++  RD++A A+TGSGKT  +  P          ++  R      P  LILAPTREL++QI DEA
Sbjct:  423 VTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFI------LLRHCRNDSRNGPTVLILAPTRELATQIQDEA 527          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DDX52_RAT6.969e-1439.47Probable ATP-dependent RNA helicase DDX52 OS=Rattu... [more]
DDX17_DICDI6.969e-1440.57Probable ATP-dependent RNA helicase ddx17 OS=Dicty... [more]
DBP2_AJECN6.969e-1436.36ATP-dependent RNA helicase DBP2 OS=Ajellomyces cap... [more]
DBP2_CANAL9.102e-1437.74ATP-dependent RNA helicase DBP2 OS=Candida albican... [more]
RRP3_MAGGR1.189e-1335.71ATP-dependent rRNA helicase RRP3 OS=Magnaporthe gr... [more]
ROK1_YARLI1.189e-1337.17ATP-dependent RNA helicase ROK1 OS=Yarrowia lipoly... [more]
ROK1_VANPO1.189e-1337.04ATP-dependent RNA helicase ROK1 OS=Vanderwaltozyma... [more]
ROK1_ASHGO1.189e-1337.17ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii... [more]
RH57_ARATH1.189e-1341.82DEAD-box ATP-dependent RNA helicase 57 OS=Arabidop... [more]
RH40_ARATH1.189e-1339.64DEAD-box ATP-dependent RNA helicase 40 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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