CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RHLE_ECOLI (ATP-dependent RNA helicase rhlE OS=Escherichia coli (strain K12) GN=rhlE PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1
Query:  586 TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            +F  + L  ++   +    Y +PTP+Q+ AIP  + GRDLMA AQTG+GKTA F  P++  ++  Q     +G R V   ALIL PTREL++QI
Sbjct:    2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQ--PHAKGRRPV--RALILTPTRELAAQI 91          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            G NVP P+  F E     E+  ++    + +PT +Q    P++++GRD++  AQTGSGKT +F  P +     +Q ++R  G     P+ L+LAPTREL  QI
Sbjct:   79 GTNVPHPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDG-----PIVLVLAPTRELVMQI 176          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.928e-12
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            +  +G +VP P+ +F       E+   + +  +  PTP+Q  + PI++ GRD++A A+TGSGKT  +  P         ++Q+ R    + P  L+L+PTREL++QI  EA
Sbjct:  133 ISVTGGDVPAPLTSFEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFI------HLQQRRKNPQLGPTILVLSPTRELATQIQAEA 237          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_NEUCR (ATP-dependent rRNA helicase rrp-3 OS=Neurospora crassa GN=rrp-3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 1
Query:  478 DAEQPFAEAENTGINFDAYEDIPVETSGEN--VPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQI 867
            DA +P AE      N    + + ++ + E   V     TF ++ + + L     R  Y  PTP+Q  +IP+++  RD++  A+TGSGKTAAF  PI+  ++      +P       PL AL+LAPTREL++QI
Sbjct:   54 DAPEP-AEESTPATNSTEEDSVTLDVAPEQEEVETVKKTFKDLGIVDALCEACERLGYKNPTPIQEQSIPLALQNRDIIGIAETGSGKTAAFALPILQALL-----DKPA------PLFALVLAPTRELAAQI 174          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_USTMA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ustilago maydis GN=PRP5 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +   G + P P+  ++   L       I+R  Y  PTP+Q  A+P  ++GRD++  A+TGSGKT AF  P+   I  ++ V+   G     P+ +I+ PTREL+ QI+ E
Sbjct:  464 ITVRGRDCPKPLTKWSHCGLPASCLDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPSEG-----PVGIIMTPTRELAVQIYRE 568          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP11_SCHPO (Pre-mRNA-processing ATP-dependent RNA helicase prp11 OS=Schizosaccharomyces pombe GN=prp11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++  G + P PV ++++  L  +    I    Y KPT +Q  AIP   +GRD++  A+TGSGKT AF  P+   I  ++ ++   G     P+A+I+ PTREL+ QI  E
Sbjct:  406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEG-----PIAIIMTPTRELAVQIFRE 510          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_LODEL (ATP-dependent RNA helicase MAK5 OS=Lodderomyces elongisporus GN=MAK5 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 51/160 (31.87%), Postives = 76/160 (47.50%), Query Frame = 1
Query:  451 EVNPFGDDIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRC------------KYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQ-------RPRGARTVYPLALILAPTRELSSQIHD 873
            E   FGDDI  E+  ++     +N     D     +  N+  P+    EIDL E     I  C            K+  PTP+Q+  IP+++ G+D++  A TGSGKT A+  PI+     E+Y+Q       + R     +P  +I APTREL+ Q+ D
Sbjct:  163 EFTGFGDDIAKEEKDSDGAKKKLNSSEDIDELKYNAFANLDLPLPNDDEIDLPEWGEDKIETCLSPYILNGLSNMKFTTPTPIQKRTIPLALEGKDVIGKATTGSGKTLAYGIPIL-----EKYIQSLDTVKRKVREKVVNHPTGIIFAPTRELAHQVVD 317          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_MAGGR (ATP-dependent RNA helicase DBP9 OS=Magnaporthe grisea GN=DBP9 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 38/98 (38.78%), Postives = 61/98 (62.24%), Query Frame = 1
Query:  583 NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++FA++ L   L   + +  + KPT VQ  AIP+++ GRD++A A+TGSGKTAA+  PI+  +++ + +         Y  +LIL PTREL+ Q+  E
Sbjct:   43 SSFADLGLDPRLLQAVAQQSFQKPTLVQSKAIPLALEGRDVLAKAKTGSGKTAAYVLPILQAVLKRKQI----NPGATYISSLILVPTRELTVQVTKE 136          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_ASPFU (ATP-dependent RNA helicase dbp9 OS=Aspergillus fumigatus GN=dbp9 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            F  ++L   L   + + ++ KPTPVQ  AIP+++ G+D++A A+TGSGKTAA+  PI+  I++++       A T     LIL PTREL+ Q+
Sbjct:   59 FESLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATT----GLILVPTRELAEQV 147          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP9_ASPCL (ATP-dependent RNA helicase dbp9 OS=Aspergillus clavatus GN=dbp9 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 38/93 (40.86%), Postives = 59/93 (63.44%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQI 867
            F  ++L   L   + + ++ KPTPVQ  AIP+++ G+D++A A+TGSGKTAA+  PI+  I++++       A T     LIL PTREL+ Q+
Sbjct:   29 FENLNLDPRLRQALIKEQFTKPTPVQSKAIPLALEGKDILARAKTGSGKTAAYVLPILQTILQKKAADPSLKATT----GLILVPTRELAEQV 117          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
RHLE_ECOLI2.928e-1243.62ATP-dependent RNA helicase rhlE OS=Escherichia col... [more]
DBP2_ENCCU2.928e-1237.86ATP-dependent RNA helicase DBP2 OS=Encephalitozoon... [more]
DB10_NICSY2.928e-1234.23ATP-dependent RNA helicase-like protein DB10 OS=Ni... [more]
RRP3_NEUCR3.824e-1235.34ATP-dependent rRNA helicase rrp-3 OS=Neurospora cr... [more]
PRP5_USTMA3.824e-1235.45Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP11_SCHPO3.824e-1236.36Pre-mRNA-processing ATP-dependent RNA helicase prp... [more]
MAK5_LODEL3.824e-1231.88ATP-dependent RNA helicase MAK5 OS=Lodderomyces el... [more]
DBP9_MAGGR3.824e-1238.78ATP-dependent RNA helicase DBP9 OS=Magnaporthe gri... [more]
DBP9_ASPFU3.824e-1240.86ATP-dependent RNA helicase dbp9 OS=Aspergillus fum... [more]
DBP9_ASPCL3.824e-1240.86ATP-dependent RNA helicase dbp9 OS=Aspergillus cla... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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