CK934523
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12 Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 SG ++P P+ TF E + + ++ + KPT +Q P++++GRD++ A TGSGKT ++C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 104 SGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQTE 205
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12 Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 SG ++P P+ TF E + + ++ + KPT +Q P++++GRD++ A TGSGKT ++C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 104 SGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQTE 205
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12 Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 G ++P P+ TF E E + ++ + PT +Q P++++GRD++ A TGSGKT ++C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 89 GSDIPHPITTFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDG-----PVVLVLAPTRELAVQIQQE 189
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12 Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 SG +VP P+ +F E + +++ + KPT +Q P++++GRD++ A TGSGKT ++C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 104 SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG-----PIVLVLAPTRELAVQIQKE 205
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12 Identity = 38/107 (35.51%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 +G ++P P+ TF E + + ++ + KPT +Q P++++GRD++ A TGSGKT ++C P I I + + G P+ L+LAPTREL+ QI E Sbjct: 101 TGHDIPKPITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDG-----PIVLVLAPTRELAVQIQKE 202
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12 Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1 Query: 472 DIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQIHD 873 D + E+P ++N Y + V+ S E TF ++ + + + K+ KPTP+Q +IP ++ GRD++ AQTGSGKTAAF P++ + + P+ PL ++LAPTREL+ QI + Sbjct: 38 DNEEEEPKKSSKN-------YTSVEVDESEEQT----KTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSL-----YENPQ------PLYCVVLAPTRELAYQISE 150
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_PICGU (ATP-dependent RNA helicase ROK1 OS=Pichia guilliermondii GN=ROK1 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12 Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870 V SG ++P P+ +F ++ +L +L N+ Y +PT +Q AIP S GRDL+ACA TGSGKT A+ P+ ++ + G R V ++APT EL+ QI+ Sbjct: 90 VNVSGTDIPLPIGSFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKN-YGIRGV-----VIAPTNELAIQIY 195
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12 Identity = 34/106 (32.08%), Postives = 62/106 (58.49%), Query Frame = 1 Query: 556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873 +G+++PPP+ F ++ + ++ V+PTP+Q +P+ +AGRD++ A TGSGKT F P+I ++E+ + P+ LI+ P+REL+ Q ++ Sbjct: 137 NGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEG--PIGLIVCPSRELARQTYE 240
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12 Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1 Query: 559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879 G P P TF E+ +++ + PTP+Q + PI++ RD++A A+TGSGKT + P + R Q+ R P L+L+PTREL++QI DEA Sbjct: 172 GNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDG------PTVLVLSPTRELATQIQDEA 272
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_PICGU (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Pichia guilliermondii GN=PRP5 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12 Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1 Query: 547 VETSGENVPPPVNTFAEIDLGEELNLNIR-RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876 ++ G + P P+ +A++ L + + + Y P+P+Q A+P ++GRD++ A TGSGKT AF P+I IM + ++ G P+ +IL PTREL+ QI E Sbjct: 254 IKVRGSDCPMPIQKWAQLGLPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDG-----PIGVILTPTRELALQIQKE 359 The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 333
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bpback to top |