CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_YEAST (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae GN=DBP2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            SG ++P P+ TF E    + +   ++   + KPT +Q    P++++GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  104 SGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQTE 205          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_YEAS7 (ATP-dependent RNA helicase DBP2 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            SG ++P P+ TF E    + +   ++   + KPT +Q    P++++GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  104 SGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDG-----PIVLVLAPTRELAVQIQTE 205          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G ++P P+ TF E    E +   ++   +  PT +Q    P++++GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:   89 GSDIPHPITTFDEAGFPEYVLNEVKAQGFPSPTAIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPAIVHINAQPLLSPGDG-----PVVLVLAPTRELAVQIQQE 189          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            SG +VP P+ +F E      +   +++  + KPT +Q    P++++GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  104 SGHDVPKPIRSFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDG-----PIVLVLAPTRELAVQIQKE 205          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.824e-12
Identity = 38/107 (35.51%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            +G ++P P+ TF E    + +   ++   + KPT +Q    P++++GRD++  A TGSGKT ++C P I  I  +  +    G     P+ L+LAPTREL+ QI  E
Sbjct:  101 TGHDIPKPITTFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDG-----PIVLVLAPTRELAVQIQKE 202          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_YARLI (ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipolytica GN=RRP3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 1
Query:  472 DIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQIHD 873
            D + E+P   ++N       Y  + V+ S E       TF ++ + + +       K+ KPTP+Q  +IP ++ GRD++  AQTGSGKTAAF  P++  +      + P+      PL  ++LAPTREL+ QI +
Sbjct:   38 DNEEEEPKKSSKN-------YTSVEVDESEEQT----KTFKDLGVIDSICETCEELKFTKPTPIQAQSIPYALEGRDIIGLAQTGSGKTAAFAIPVLQSL-----YENPQ------PLYCVVLAPTRELAYQISE 150          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: ROK1_PICGU (ATP-dependent RNA helicase ROK1 OS=Pichia guilliermondii GN=ROK1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 42/112 (37.50%), Postives = 63/112 (56.25%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEI----DLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            V  SG ++P P+ +F ++    +L  +L  N+    Y +PT +Q  AIP S  GRDL+ACA TGSGKT A+  P+   ++     +   G R V     ++APT EL+ QI+
Sbjct:   90 VNVSGTDIPLPIGSFEDLIARCNLNRKLLANLIASGYSEPTAIQCEAIPASAEGRDLIACAPTGSGKTLAYLIPMAQALISSPKTKN-YGIRGV-----VIAPTNELAIQIY 195          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH35_ARATH (DEAD-box ATP-dependent RNA helicase 35 OS=Arabidopsis thaliana GN=RH35 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 34/106 (32.08%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  556 SGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            +G+++PPP+  F ++     +   ++    V+PTP+Q   +P+ +AGRD++  A TGSGKT  F  P+I   ++E+ +          P+ LI+ P+REL+ Q ++
Sbjct:  137 NGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEG--PIGLIVCPSRELARQTYE 240          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDEA 879
            G   P P  TF       E+   +++  +  PTP+Q  + PI++  RD++A A+TGSGKT  +  P    + R Q+  R        P  L+L+PTREL++QI DEA
Sbjct:  172 GNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQHNSRDG------PTVLVLSPTRELATQIQDEA 272          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP5_PICGU (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Pichia guilliermondii GN=PRP5 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  547 VETSGENVPPPVNTFAEIDLGEELNLNIR-RCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ++  G + P P+  +A++ L   +   +  +  Y  P+P+Q  A+P  ++GRD++  A TGSGKT AF  P+I  IM +  ++   G     P+ +IL PTREL+ QI  E
Sbjct:  254 IKVRGSDCPMPIQKWAQLGLPSSIMTVLEEKLGYDTPSPIQSQALPAIMSGRDIIGVANTGSGKTLAFVIPLIRHIMDQPPLKSGDG-----PIGVILTPTRELALQIQKE 359          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
DBP2_YEAST3.824e-1236.45ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_YEAS73.824e-1236.45ATP-dependent RNA helicase DBP2 OS=Saccharomyces c... [more]
DBP2_PICST3.824e-1235.85ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]
DBP2_KLULA3.824e-1236.45ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
DBP2_CANGA3.824e-1235.51ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
RRP3_YARLI4.995e-1233.33ATP-dependent rRNA helicase RRP3 OS=Yarrowia lipol... [more]
ROK1_PICGU4.995e-1237.50ATP-dependent RNA helicase ROK1 OS=Pichia guillier... [more]
RH35_ARATH4.995e-1232.08DEAD-box ATP-dependent RNA helicase 35 OS=Arabidop... [more]
RH14_ORYSJ4.995e-1236.45DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
PRP5_PICGU4.995e-1235.14Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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