CK934523

Overview
NameCK934523
Unique NameCK934523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: PRP28_KLULA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Kluyveromyces lactis GN=PRP28 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 47/119 (39.50%), Postives = 62/119 (52.10%), Query Frame = 1
Query:  535 EDIPVETSGENVPPPVNTFAEIDLGEE--LNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPI---ISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            ED  + + G  V  P+  + E+ L  E  LN+      Y +PT +QR  IP  +  RD +  A TGSGKT AF  PI   + GI     + +  G     PLAL+LAPTREL+ QI  E
Sbjct:  120 EDFNISSKGGTVEKPLRNWHELKLIPEDLLNIITNDLHYNEPTSIQRSTIPNVINNRDFIGVASTGSGKTLAFLLPILIKLHGIPPLNSITKHDG-----PLALVLAPTRELAQQIQHE 233          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: GLH4_CAEEL (ATP-dependent RNA helicase glh-4 OS=Caenorhabditis elegans GN=glh-4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  484 EQPFAEAENTGINFDAYEDIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQ 864
            ++ F +A N     D  + +   T    +P   +      L ++L+ N++R K  +PTP+QR +    + G D++ACA TGSGKT AF  P +  +M E    R        P  LI+APTREL +Q
Sbjct:  703 DKMFEDAVNNDDKIDFDQKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPIMHGNDVVACAHTGSGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQ 829          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DDX41_MOUSE (Probable ATP-dependent RNA helicase DDX41 OS=Mus musculus GN=Ddx41 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 35/104 (33.65%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIH 870
            G+ +PPP+ +F E+     +   +++   + PTP+Q   IP  ++GRD++  A TGSGKT  F  P+I   + ++  +R   ++   P  LI+ P+REL+ Q H
Sbjct:  173 GDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQE--KRLPFSKREGPYGLIICPSRELARQTH 274          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_ASHGO (ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii GN=DBP3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 40/99 (40.40%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  577 PVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            P+ +F+ ++L   +   I   K+ KPTP+Q  + P  +AG+D++  A+TGSGKT AF  P I+ +M E+    PRG +      L+++PTREL+SQI+D
Sbjct:  123 PLLSFSHLNLHSAIQKEIS--KFPKPTPIQAVSWPYLLAGKDVIGVAETGSGKTFAFGVPAINSLMSEK--STPRGVK-----CLVISPTRELASQIYD 212          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP2_MAGGR (ATP-dependent RNA helicase DBP2 OS=Magnaporthe grisea GN=DBP2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.995e-12
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  559 GENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHDE 876
            G +VP PV TF E      +   ++   +  PT +Q    P++++GRD++  A+TGSGKT  +C P I  I  +  +    G     P+ LILAPTREL+ QI  E
Sbjct:  117 GSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDG-----PIVLILAPTRELAVQIQAE 217          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: RRP3_CHAGB (ATP-dependent rRNA helicase RRP3 OS=Chaetomium globosum GN=RRP3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 43/118 (36.44%), Postives = 69/118 (58.47%), Query Frame = 1
Query:  520 NFDAYEDIPVETSGENVPPPV-NTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPL-ALILAPTRELSSQI 867
            N +A  +   + SGE    P   TF ++ + + L    +   + KPTP+Q+ +IP+++  RD++  A+TGSGKT AF  PI+  ++      +P+      PL AL+LAPTREL++QI
Sbjct:   43 NSEAESETIDDASGEESEEPAPKTFQDLGIVDSLCDACKELGWKKPTPIQQESIPLALQDRDIIGLAETGSGKTGAFALPILQALL-----DKPQ------PLFALVLAPTRELAAQI 149          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_MAGGR (ATP-dependent RNA helicase MAK5 OS=Magnaporthe grisea GN=MAK5 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 40/101 (39.60%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  580 VNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIIS---GIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            V+ +  + L EE+  +I + K+ KPT +Q   IP  +AG D++  A TGSGKT AF  PI+     I      +R     T  P+AL+L+PTREL+ Q+ D
Sbjct:  211 VSEWEPLGLSEEIMSSIAKLKFAKPTAIQAATIPEILAGHDVVGKASTGSGKTLAFGIPIVEKWLSINASTQSKRVAEGETKTPIALVLSPTRELAHQLTD 311          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: MAK5_GIBZE (ATP-dependent RNA helicase MAK5 OS=Gibberella zeae GN=MAK5 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 36/95 (37.89%), Postives = 59/95 (62.11%), Query Frame = 1
Query:  589 FAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            +  ++L  ++   I + K++KPT +Q+  IP  VAG D++  AQTGSGKT AF  P++   +  Q     +G +   P++L+L+PTREL+ Q+ D
Sbjct:  217 WVSLNLSPQIISAIAKLKFMKPTKIQKRTIPEIVAGHDVIGKAQTGSGKTLAFGIPMVERWLEMQ----EQGVKRTGPMSLVLSPTRELAKQLGD 307          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DRS1_DEBHA (ATP-dependent RNA helicase DRS1 OS=Debaryomyces hansenii GN=DRS1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 1
Query:  472 DIDAEQPFAEAENTGINFDAYEDIPVETSGENVPPPVN-----TFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            D+D E P ++ E+     D  ED+    + E            TF  + L   +   + +  Y KP+P+Q   IPI++ G+D++A A TGSGKTAA+  PII     E+ + +P  A+      ++LAPTREL+ Q+ D
Sbjct:  216 DMDEEYPGSDQEDEKPVEDTAEDMAEFYADEEEATTAKKQLHTTFQSLQLSRPVLKGLSQLGYTKPSPIQSACIPIALLGKDIVAGAVTGSGKTAAYMIPII-----ERLLYKP--AKISSTRVIVLAPTRELAIQVCD 347          
BLAST of CK934523 vs. ExPASy Swiss-Prot
Match: DBP3_YEAST (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae GN=DBP3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.523e-12
Identity = 44/112 (39.29%), Postives = 67/112 (59.82%), Query Frame = 1
Query:  538 DIPVETSGENVPPPVNTFAEIDLGEELNLNIRRCKYVKPTPVQRHAIPISVAGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRGARTVYPLALILAPTRELSSQIHD 873
            +I VE S +    P+ +F  + L   +   I   K+ KPTP+Q  A P  ++G+D++  A+TGSGKT AF  P IS +M +   Q+ RG +      L+++PTREL+SQI+D
Sbjct:   99 EIAVEDSLDLALRPLLSFDYLSLDSSIQAEIS--KFPKPTPIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMND---QKKRGIQ-----VLVISPTRELASQIYD 200          
The following BLAST results are available for this feature:
BLAST of CK934523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 333
Match NameE-valueIdentityDescription
PRP28_KLULA4.995e-1239.50Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
GLH4_CAEEL4.995e-1233.86ATP-dependent RNA helicase glh-4 OS=Caenorhabditis... [more]
DDX41_MOUSE4.995e-1233.65Probable ATP-dependent RNA helicase DDX41 OS=Mus m... [more]
DBP3_ASHGO4.995e-1240.40ATP-dependent RNA helicase DBP3 OS=Ashbya gossypii... [more]
DBP2_MAGGR4.995e-1237.74ATP-dependent RNA helicase DBP2 OS=Magnaporthe gri... [more]
RRP3_CHAGB6.523e-1236.44ATP-dependent rRNA helicase RRP3 OS=Chaetomium glo... [more]
MAK5_MAGGR6.523e-1239.60ATP-dependent RNA helicase MAK5 OS=Magnaporthe gri... [more]
MAK5_GIBZE6.523e-1237.89ATP-dependent RNA helicase MAK5 OS=Gibberella zeae... [more]
DRS1_DEBHA6.523e-1233.81ATP-dependent RNA helicase DRS1 OS=Debaryomyces ha... [more]
DBP3_YEAST6.523e-1239.29ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_A09 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934523 ID=CK934523; Name=CK934523; organism=Citrus sinensis; type=EST; length=879bp
GCGGGGCACACGNNNAAACACCGCGAGCAACCNNNAGAAGAAGAAAAAAC
GAAGAAAGAGATTTGATTTTTGATCTGATTTTCAAACGAGGGGTTTTTGA
TCTGATAGTTAGATAGTTAGAAAGCAAACGAAAAATTTAGGGGGTAAAAT
TTTGCAATTATGAGCACATCATGGGCTGATTCAGTCTCTGCATCTGAGAA
TGCAGCCCCTGCTTCTTTTAACACCAATTCATTACCTCGATCCACTTATG
TTCCACCGCATCTCCGTAACAAGCAACCGGCCTCCTTTGAACCTCCTGCT
CCATCACGGGAAGCTCATGAACCTGCTAGTGGGCCCCGCTGGGGCGGTGG
TCCAAGGCCTGATTTTGGGCGTGGTCAGGGTTATGGTTCTGGTGGTAGAA
CTGGCGGTGGTTGGAATAATAGGAGTGGGGGGTGGGACCGAAGAGTACGT
GAAGTGAACCCGTTTGGTGATGACATTGATGCAGAGCAGCCGTTTGCTGA
AGCAGAAAACACGGGTATCAATTTTGATGCTTATGAGGATATTCCGGTGG
AGACGAGTGGGGAAAATGTGCCACCACCAGTTAATACATTTGCAGAAATA
GATCTGGGGGAAGAATTGAATCTTAATATTAGAAGGTGCAAGTACGTCAA
ACCCACCCCAGTTCAGCGTCATGCAATTCCTATATCGGTTGCTGGACGAG
ATTTAATGGCCTGTGCTCAGACAGGGTCGGGGAAGACAGCTGCCTTTTGT
TTTCCAATTATTAGTGGGATAATGCGTGAGCAGTATGTACAGAGACCACG
TGGAGCACGGACTGTTTATCCTCTGGCTCTTATTCTCGCCCCTACGAGAG
AACTCTCATCTCAGATACATGATGAAGCC
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