CK934530

Overview
NameCK934530
Unique NameCK934530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   78 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.902e-17
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   ++    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   22 NSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL ++    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   79 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   79 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   78 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.929e-16
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 2
Query:    5 SGWIPCLEFE-LEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            + W PCLEF   ++ +V  ++    G     Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQVQ   F+  +P
Sbjct:   71 NNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15
Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2
Query:   71 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.959e-13
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 2
Query:   23 LEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +EF L++G++     +     +  +WTMWKLP +G   A +VL EV E + E P+ ++R+IGFDN +Q Q +SFI  KP
Sbjct:   28 VEFLLDQGFIPGVEFEEDPQPETHFWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.753e-13
Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 2
Query:   23 LEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +E+ + +G++              YWTMWKLP++  T   +VL EV E + EYP+ ++R++GFDN +Q Q +SFI  KP
Sbjct:   28 IEYMVREGYIPAVEFNEDSDATTCYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 1.965e-12
Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 2
Query:   23 LEFELEKGW---VYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +E+ +E+G+   +    H +P  +   YWTMWKLP++ C    QVL EV E + EY   ++R+ GFDN +Q Q +SFI  +P
Sbjct:   30 IEYMIEQGFHPLIEFNEHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108          
The following BLAST results are available for this feature:
BLAST of CK934530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS1_ACEAT2.649e-1743.48Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_ACECL5.902e-1742.39Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS7_ACECL7.708e-1742.39Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_ACEAT1.007e-1642.39Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT1.007e-1642.39Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_BATOE2.929e-1641.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ACECL1.899e-1551.56Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS_SYNY33.959e-1341.77Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_PROHO6.753e-1339.24Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNP61.965e-1240.24Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934530 ID=CK934530; Name=CK934530; organism=Citrus sinensis; type=EST; length=435bp
GGGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGG
TGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGG
ACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTT
GAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAA
TTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCT
GCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCA
TGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGA
TCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTG
CTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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