CK934530
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17 Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2 Query: 5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262 + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 78 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.902e-17 Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 Query: 5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262 + W PCLEF ++ + ++ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 22 NSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.708e-17 Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 2 Query: 5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262 + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL ++ K +P +++R++ FD RQVQ F+ +PP Sbjct: 79 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16 Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262 + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 79 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16 Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2 Query: 5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262 + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 78 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 2.929e-16 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 2 Query: 5 SGWIPCLEFE-LEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 + W PCLEF ++ +V ++ G Y D RYWTMWKLPM+GC D +QVL E+ K +P +++R++ FD RQVQ F+ +P Sbjct: 71 NNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.899e-15 Identity = 33/64 (51.56%), Postives = 44/64 (68.75%), Query Frame = 2 Query: 71 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262 S Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 3.959e-13 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 2 Query: 23 LEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 +EF L++G++ + + +WTMWKLP +G A +VL EV E + E P+ ++R+IGFDN +Q Q +SFI KP Sbjct: 28 VEFLLDQGFIPGVEFEEDPQPETHFWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.753e-13 Identity = 31/79 (39.24%), Postives = 48/79 (60.76%), Query Frame = 2 Query: 23 LEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 +E+ + +G++ YWTMWKLP++ T +VL EV E + EYP+ ++R++GFDN +Q Q +SFI KP Sbjct: 28 IEYMVREGYIPAVEFNEDSDATTCYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 71.2478 bits (173), Expect = 1.965e-12 Identity = 33/82 (40.24%), Postives = 50/82 (60.98%), Query Frame = 2 Query: 23 LEFELEKGW---VYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 +E+ +E+G+ + H +P + YWTMWKLP++ C QVL EV E + EY ++R+ GFDN +Q Q +SFI +P Sbjct: 30 IEYMIEQGFHPLIEFNEHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108 The following BLAST results are available for this feature:
BLAST of CK934530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934530 ID=CK934530; Name=CK934530; organism=Citrus sinensis; type=EST; length=435bpback to top |