CK934530

Overview
NameCK934530
Unique NameCK934530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.328e-36
Identity = 65/86 (75.58%), Postives = 74/86 (86.05%), Query Frame = 2
Query:    8 GWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            GW+PCLEFELE G VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP  + RIIGFDN RQVQCISF+A KP G
Sbjct:   96 GWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.328e-36
Identity = 65/87 (74.71%), Postives = 77/87 (88.51%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            S W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQV+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:   21 SKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 3.328e-36
Identity = 65/87 (74.71%), Postives = 77/87 (88.51%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            S W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   83 SKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.347e-36
Identity = 63/83 (75.90%), Postives = 76/83 (91.57%), Query Frame = 2
Query:   11 WIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP
Sbjct:   88 WVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 4.347e-36
Identity = 65/87 (74.71%), Postives = 77/87 (88.51%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            S W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   82 SKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 62/85 (72.94%), Postives = 76/85 (89.41%), Query Frame = 2
Query:   11 WIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G
Sbjct:   93 WVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 59/85 (69.41%), Postives = 78/85 (91.76%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PC+EF++  G+VYRE+H+SPG+YDGRYWTMWKLPM+GCTD++QV++E+ E +KEYP +F+R+IGFDN RQVQCISFIA KP
Sbjct:   95 NGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.414e-36
Identity = 65/85 (76.47%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PCLEFE E G+VYREH  SPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RIIGFDN RQVQCISFIA KP
Sbjct:   93 NGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.265e-35
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            S W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   83 SKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.265e-35
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            S W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   83 SKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
The following BLAST results are available for this feature:
BLAST of CK934530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS_HEVBR3.328e-3675.58Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_WHEAT3.328e-3674.71Ribulose bisphosphate carboxylase small chain clon... [more]
RBS2_WHEAT3.328e-3674.71Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS6_FLAPR4.347e-3675.90Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_WHEAT4.347e-3674.71Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS_HELAN5.677e-3672.94Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_CUCSA5.677e-3669.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_STELP7.414e-3676.47Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ1.265e-3577.01Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS1_ORYSJ1.265e-3577.01Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934530 ID=CK934530; Name=CK934530; organism=Citrus sinensis; type=EST; length=435bp
GGGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGG
TGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGG
ACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTT
GAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAA
TTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCT
GCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCA
TGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGA
TCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTG
CTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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