CK934530

Overview
NameCK934530
Unique NameCK934530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.115e-34
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:   93 NGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 177          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.115e-34
Identity = 60/85 (70.59%), Postives = 72/85 (84.71%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP
Sbjct:   94 NGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 4.068e-34
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            S WIPCLEFELE+G+V+R++   P YYDGRYWTMWKLPM+GCTD+ QVL+E+   +KEYP++F+RIIGFDN RQVQCISFIA KP G
Sbjct:   95 SKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPKG 181          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.068e-34
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   95 NGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 4.068e-34
Identity = 61/85 (71.76%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   95 NGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.313e-34
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP
Sbjct:   91 NGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.939e-34
Identity = 63/84 (75.00%), Postives = 71/84 (84.52%), Query Frame = 2
Query:    8 GWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            GW+PCLEFE+    VYRE++KSPGYYDGRYWTMWKLPM+GCTDA+QV  EV E +  YP + VRIIGFDNKRQVQCISFIA KP
Sbjct:   93 GWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.063e-34
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            +GWIPC+EF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCISF+  KP G
Sbjct:   92 NGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 9.063e-34
Identity = 60/85 (70.59%), Postives = 74/85 (87.06%), Query Frame = 2
Query:    5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:   95 NGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.184e-33
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 2
Query:   11 WIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            W+PC+EF  E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCISFIA KP
Sbjct:   91 WVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172          
The following BLAST results are available for this feature:
BLAST of CK934530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS5_MESCR3.115e-3470.59Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_MESCR3.115e-3470.59Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_GOSHI4.068e-3471.26Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FRIAG4.068e-3471.76Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_FRIAG4.068e-3471.76Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_MESCR5.313e-3471.76Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_SILPR6.939e-3475.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE9.063e-3472.41Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_FRIAG9.063e-3470.59Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS1_LEMGI1.184e-3375.90Ribulose bisphosphate carboxylase small chain SSU1... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934530 ID=CK934530; Name=CK934530; organism=Citrus sinensis; type=EST; length=435bp
GGGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGG
TGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGG
ACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTT
GAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAA
TTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCT
GCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCA
TGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGA
TCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTG
CTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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