CK934530
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 2.637e-33 Identity = 60/85 (70.59%), Postives = 73/85 (85.88%), Query Frame = 2 Query: 5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 +GW+PCLEF LE G+V R+++KSPGYYDGRYWTMWKLPM+GCT A QV+KE E +KEYP +F+R+IGFDN RQVQC+SFI KP Sbjct: 95 NGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 4.498e-33 Identity = 62/84 (73.81%), Postives = 70/84 (83.33%), Query Frame = 2 Query: 8 GWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 GW+PCLEFEL KG+VY EH+KSP YYDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCISFIA P Sbjct: 50 GWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 1.002e-32 Identity = 60/77 (77.92%), Postives = 69/77 (89.61%), Query Frame = 2 Query: 32 ELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262 ELE G+VYREH +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 2.232e-32 Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 2 Query: 8 GWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265 GWIP LEFE++ G+VYREH KSPGYYDGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCISFIA KP G Sbjct: 37 GWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 3.808e-32 Identity = 60/87 (68.97%), Postives = 72/87 (82.76%), Query Frame = 2 Query: 5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265 S W+PCLEF + G+++REH+ SPGYYDGRYWTMWKLPM+GC TQV+ EV EV+KEYP + RIIGFDN RQVQ +SFIA+KPPG Sbjct: 83 SKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.447e-31 Identity = 60/87 (68.97%), Postives = 70/87 (80.46%), Query Frame = 2 Query: 5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265 +GWIPCLEF + G+VYRE+ SP YYDGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q QC+SFIA KPPG Sbjct: 83 NGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.225e-30 Identity = 56/83 (67.47%), Postives = 70/83 (84.34%), Query Frame = 2 Query: 11 WIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 W+PCLEF+LE G + R++++SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQVQCISFI KP Sbjct: 89 WVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 3.564e-30 Identity = 57/83 (68.67%), Postives = 67/83 (80.72%), Query Frame = 2 Query: 11 WIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259 W+PCLEFE E G + R + SPGYYDGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQVQCISFI KP Sbjct: 105 WVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.024e-25 Identity = 54/87 (62.07%), Postives = 64/87 (73.56%), Query Frame = 2 Query: 5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265 + W+PCLEF E G+VYRE+ SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E YP I+GFDN RQ Q ++FIA KP G Sbjct: 82 NNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.643e-25 Identity = 51/86 (59.30%), Postives = 64/86 (74.42%), Query Frame = 2 Query: 5 SGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFIAAKP 259 SGW PC+EF+++ G V RE PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC SFI +P Sbjct: 94 SGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178 The following BLAST results are available for this feature:
BLAST of CK934530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 113
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934530 ID=CK934530; Name=CK934530; organism=Citrus sinensis; type=EST; length=435bpback to top |