CK934530

Overview
NameCK934530
Unique NameCK934530
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length435
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.958e-22
Identity = 44/91 (48.35%), Postives = 59/91 (64.84%), Query Frame = 2
Query:    5 SGWIPCLEFE------LEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GW PCLEF       +      R    S GYYD RYWTMWKLPM+GCTD +QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F+  +P
Sbjct:   64 NGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  171 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262          

HSP 2 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  315 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406          

HSP 3 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  602 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693          

HSP 4 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  745 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836          

HSP 5 Score: 99.3673 bits (246), Expect = 6.737e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct: 1033 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124          

HSP 6 Score: 97.4413 bits (241), Expect = 2.560e-20
Identity = 44/92 (47.83%), Postives = 61/92 (66.30%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            G  PCLEF   E  ++  ++       + GYYD  YWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P G
Sbjct:  458 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549          

HSP 7 Score: 97.4413 bits (241), Expect = 2.560e-20
Identity = 44/90 (48.89%), Postives = 61/90 (67.78%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR+  FD+ +QVQ ISF+  +P
Sbjct: 1177 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266          

HSP 8 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 2
Query:    8 GWIPCLEFEL-EKGWVYREHH-----KSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 265
            G  PCLEF   E  ++  ++       + GYYD RYWTMWKLPM+GCTDA+QVL+E+ E ++ YP  +VR + FD+ +QVQ ISF+  +P G
Sbjct:  890 GLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.799e-21
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 2
Query:    5 SGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   81 NGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.149e-20
Identity = 45/91 (49.45%), Postives = 61/91 (67.03%), Query Frame = 2
Query:    5 SGWIPCLEF-ELEKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 259
            +GWIPCLEF E +K +V  E     G     YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   81 NGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.105e-18
Identity = 41/92 (44.57%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   78 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.028e-17
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+  + G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   78 NAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   80 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   78 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   79 NSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CK934530 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 2
Query:    5 SGWIPCLEFEL-EKGWVYREHHKSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 262
            + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   69 NSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160          
The following BLAST results are available for this feature:
BLAST of CK934530 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
RBS_CHLMO7.958e-2248.35Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_EUGGR6.737e-2148.91Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS1_CHLRE8.799e-2149.45Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS2_CHLRE1.149e-2049.45Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_ACEAT9.105e-1844.57Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS6_ACECL2.028e-1743.48Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACECL2.649e-1743.48Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACECL2.649e-1743.48Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACECL2.649e-1743.48Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_ACEAT2.649e-1743.48Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004258_B05 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10004_IF_B05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934530 ID=CK934530; Name=CK934530; organism=Citrus sinensis; type=EST; length=435bp
GGGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGGATGGG
TGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCTACTGG
ACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTT
GAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCATTCGTCCGAA
TTATCGGATTTGACAACAAGCGTCAAGTGCAGTGCATCAGTTTCATTGCT
GCCAAGCCACCAGGCGTCTAGGTTCCCAATTAAATTTGTGTAACCACCCA
TGCAATATTGTTGATTATTATTATGTGTAACCCCCATAATGATCATTCGA
TCAATGGGGGTTCGGTTTGCGTTTAATTTGTACTTAGGCTGCTGTTGCTG
CTGCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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