CK934531

Overview
NameCK934531
Unique NameCK934531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934531_ssr25 microsatellite CK934531_ssr25:25..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 5.771e-30
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 3 
Query:  147 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            GW+ A ATFY              YGNLY+QGYGT TAALSTALFN+GL+CG CY++ C    D  WC PG ++ +TATNF
Sbjct:   33 GWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYKLVCDRKTDRTWCKPGVSVTITATNF 113

HSP 2 Score: 59.3066 bits (142), Expect = 5.771e-30
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 2 
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD++QP ++ I  YR G++PV Y+R
Sbjct:  113 FCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIYRGGIIPVIYQR 159
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.771e-30
Identity = 44/80 (55.00%), Postives = 51/80 (63.75%), Query Frame = 3 
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            W+ A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNF
Sbjct:   52 WLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCRPGVTVTITATNF 131

HSP 2 Score: 60.8474 bits (146), Expect = 9.771e-30
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 2 
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+R
Sbjct:  131 FCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVIYQR 177
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 3.660e-29
Identity = 45/80 (56.25%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            W  A ATFY              YGNLYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNF
Sbjct:   39 WQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNF 118

HSP 2 Score: 58.9214 bits (141), Expect = 3.660e-29
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 2 
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+R
Sbjct:  118 FCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYSAGIIPVIYQR 164
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 8.072e-29
Identity = 44/80 (55.00%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            W+ A ATFY              Y +LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ VTATNF
Sbjct:   50 WLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTVTATNF 129

HSP 2 Score: 60.8474 bits (146), Expect = 8.072e-29
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 2 
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD++QP ++ I  YRAG++PV Y+R
Sbjct:  129 FCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYRAGIIPVMYQR 175
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP29_ORYSJ (Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.081e-29
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 3 
Query:  132 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            A    GW    ATFY              YGNLY+QGYGT TAALSTALF++G SCG CY + C    DP+WC  G ++ VTATNF
Sbjct:   28 AFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFDDGASCGQCYALTCDARADPRWCRAGASVTVTATNF 113

HSP 2 Score: 61.2326 bits (147), Expect = 8.081e-29
Identity = 23/47 (48.94%), Postives = 31/47 (65.96%), Query Frame = 2 
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD++QP ++ I  YR G+VPVA++R
Sbjct:  113 FCPPNYALPSDDGGWCNPPRPHFDMAQPAWERIGVYRGGIVPVAFRR 159
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.783e-28
Identity = 44/80 (55.00%), Postives = 50/80 (62.50%), Query Frame = 3 
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            W  A ATFY              YG+LYSQGYGT  AALSTALFN+G SCG CY+I C     P+WC PG T+ +TATNF
Sbjct:   34 WQKAHATFYGGADASGTMGGGCGYGDLYSQGYGTRNAALSTALFNDGASCGQCYKIACDRKRAPQWCKPGVTVTITATNF 113

HSP 2 Score: 58.5362 bits (140), Expect = 1.783e-28
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 2 
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP+ HFD++QP ++ I  Y AG++PV Y+R
Sbjct:  113 FCPPNWDLPSDNGGWCNPPRPHFDMAQPAWEKIGIYSAGIIPVIYQR 159
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA8_ORYSJ (Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.785e-28
Identity = 43/79 (54.43%), Postives = 47/79 (59.49%), Query Frame = 3 
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC-VNDPKWCLPGT-IMVTATNF 380
            W  A ATFY              YG+LY  GYGT TAALSTALFN G SCG+C+ I C     +WC PGT I VTATNF
Sbjct:   25 WTPAFATFYGGSDASGTMGGACGYGDLYGAGYGTRTAALSTALFNGGASCGACFTIACDTRKTQWCKPGTSITVTATNF 103

HSP 2 Score: 64.6994 bits (156), Expect = 1.785e-28
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 2 
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCNPP++HFD+SQP ++ IA YRAG+VPV Y+R
Sbjct:  103 FCPPNYALSGDAGGWCNPPRRHFDMSQPAWETIAVYRAGIVPVNYRR 149
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.131e-27
Identity = 43/85 (50.59%), Postives = 49/85 (57.65%), Query Frame = 3 
Query:  132 ANGGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPGT-IMVTATN 377
            A   GGW++  ATFY              YGNLY+QGYG   AALSTALFN G SCG CY I C     P+WC  GT + +TATN
Sbjct:   21 AAAAGGWVSGTATFYGGKDASGTMGGACGYGNLYTQGYGVYNAALSTALFNGGASCGQCYLIMCDASKTPEWCKAGTAVTITATN 105

HSP 2 Score: 58.5362 bits (140), Expect = 1.131e-27
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 2 
Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP+ HFD+SQP ++ I  YRAG+VPV Y++
Sbjct:  118 GGWCNPPRPHFDMSQPAWETIGIYRAGIVPVLYQQ 152
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP27_ORYSJ (Putative expansin-A27 OS=Oryza sativa subsp. japonica GN=EXPA27 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.917e-27
Identity = 42/79 (53.16%), Postives = 46/79 (58.23%), Query Frame = 3 
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDP--KWCLP-GTIMVTATN 377
            WI A ATFY              YGNLY QGYG   AALSTALFN+G +CG CY I C  D   +WC P G + VTATN
Sbjct:   27 WIPATATFYGGNDGSGTMGGACGYGNLYDQGYGLENAALSTALFNDGAACGQCYLIVCDTDKAGRWCKPRGAVTVTATN 105

HSP 2 Score: 62.3882 bits (150), Expect = 1.917e-27
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP++HFD+SQP ++ I  YRAG+VPV Y+R
Sbjct:  118 GGWCNPPRRHFDMSQPAWERIGVYRAGIVPVLYRR 152
[Close]
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 2.495e-27
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 3 
Query:  147 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVN--DPKWCLPG-TIMVTATN 377
            GW +  ATFY              YGNLY  GYGTNTAALS+ALFN+G SCG CY+I C +  +P+WCL G T+ +T TN
Sbjct:   31 GWSSGTATFYGGSDASGTMGGACGYGNLYWSGYGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTN 110

HSP 2 Score: 55.8398 bits (133), Expect = 2.495e-27
Identity = 20/35 (57.14%), Postives = 28/35 (80.00%), Query Frame = 2 
Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP+ HFD+++P +  I  Y+AG+VPV Y+R
Sbjct:  123 GGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQR 157
The following BLAST results are available for this feature:
BLAST of CK934531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP13_ORYSJ5.771e-3054.32Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ9.771e-3055.00Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ3.660e-2956.25Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ8.072e-2955.00Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP29_ORYSJ8.081e-2951.16Expansin-A29 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP14_ORYSJ1.783e-2855.00Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA8_ORYSJ1.785e-2854.43Expansin-A8 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP28_ORYSJ1.131e-2750.59Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP27_ORYSJ1.917e-2753.16Putative expansin-A27 OS=Oryza sativa subsp. japon... [more]
EXP15_ORYSJ2.495e-2752.50Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934531 ID=CK934531; Name=CK934531; organism=Citrus sinensis; type=EST; length=725bp
GGGGACTCAACTGCCTCACATTTCCTCTCTCTCTTTCTCTACTCTGCTTC
TGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTT
GGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGT
GGATCAATGCTCGTGCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACT
ATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGCCAGGGTTATGGAAC
GAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTG
GGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCC
GGCACCATTATGGTCACAGCTACCAATTTTGCCCACCGAACAACGCCCTC
CCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCT
CTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCC
CTGTAGCTTACAAGAGGTATGCTCTCTTGGTTTTAAGCTCAACAAGTGGT
AATTAATGTTCGTTAACTAGAGATTAAAACCATACTCTTATATTGTCCCC
GCTTACTATTGCTCTAGTCTAGTGGCCCAATGCTTTTATTGATTGTGATT
TGTGGTCTAGCCCAAGATTTTACTTTATTTCCCACTAATTTATTCATGGT
GGTTTTTTTCCCCCAAAAAAAAAAA
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