CK934531 | Citrus Genome Database

Overview


Name	CK934531
Unique Name	CK934531
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	725

Libraries


Library Name	Type
Developing fruit peel at 38 DAFB	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CK934531_ssr25	microsatellite	CK934531_ssr25:25..34.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.326e-25
Identity = 38/78 (48.72%), Postives = 46/78 (58.97%), Query Frame = 3

Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATN 377
            W  A ATFY              YGNLY+ GYGT+TAALST LF +G  CG+CY+++CV     C  G+  I VTATN
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATN 113

HSP 2 Score: 61.2326 bits (147), Expect = 6.326e-25
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 2

Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP+ HFDLS+P F  +A +RAG+VPV Y+R
Sbjct:  128 GGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRR 162

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.332e-25
Identity = 38/81 (46.91%), Postives = 46/81 (56.79%), Query Frame = 3

Query:  141 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATN 377
            G  W  A ATFY              YGN+Y  GYG  T ALSTALFN G +CG C+++KCV+ P  C  G+   +VTATN
Sbjct:   28 GTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATN 107

HSP 2 Score: 60.8474 bits (146), Expect = 6.332e-25
Identity = 22/37 (59.46%), Postives = 31/37 (83.78%), Query Frame = 2

Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRYA 523
            GGWCNPP+ HFDL++P F  IA ++AG++PV+Y+R A
Sbjct:  120 GGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVA 156

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.350e-25
Identity = 54/91 (59.34%), Postives = 61/91 (67.03%), Query Frame = 3

Query:  141 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFAHRTTPSPT 407
            GG W  A ATFY              YGNLYSQGYGTNTAALST+LFN+G SCG+C+EIKCVNDPKWC PG  ++ VTATNF       P+
Sbjct:   31 GGSWQTAHATFYGGNDASGTMGGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPS 121

HSP 2 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRYA 523
            FC          GGWCNPP+ HFDL+ PVF  IA+YRAG+VP++Y+R A
Sbjct:  112 FCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRRVA 160

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.817e-24
Identity = 40/80 (50.00%), Postives = 46/80 (57.50%), Query Frame = 3

Query:  147 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATN 377
            GW    ATFY              YGNLY+ GYGTNTAALS+ LFN+G SCG CY I C     P+WC  G  + +TATN
Sbjct:   26 GWNKGTATFYGGADASGTMGGACGYGNLYTAGYGTNTAALSSVLFNDGWSCGQCYLIMCDAAATPQWCRAGAAVTITATN 105

HSP 2 Score: 53.9138 bits (128), Expect = 1.817e-24
Identity = 18/35 (51.43%), Postives = 28/35 (80.00%), Query Frame = 2

Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP+ HFD+++P +  I  Y+AG++PV Y++
Sbjct:  118 GGWCNPPRPHFDMAEPAWLQIGIYKAGIIPVLYQQ 152

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA7_ARATH (Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.002e-24
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 3

Query:  144 GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATN 377
            G W  A ATFY              YGNL++ GYG +TAALST LFN+G  CG C++I C   P      + +VTATN
Sbjct:   35 GPWRYAHATFYGDETGGETMGGACGYGNLFNSGYGLSTAALSTTLFNDGYGCGQCFQITCSKSPHCYSGKSTVVTATN 112

HSP 2 Score: 60.4622 bits (145), Expect = 4.002e-24
Identity = 21/35 (60.00%), Postives = 30/35 (85.71%), Query Frame = 2

Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP+ HFD+++P F  +A +RAG++PVAY+R
Sbjct:  125 GGWCNPPRTHFDMAKPAFMKLAYWRAGIIPVAYRR 159

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP18_ORYSJ (Expansin-A18 OS=Oryza sativa subsp. japonica GN=EXPA18 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.215e-24
Identity = 44/81 (54.32%), Postives = 45/81 (55.56%), Query Frame = 3

Query:  147 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVND--PKWCLPGT-IMVTATNF 380
            GW+   ATFY              YGNLY QGYG N AALST LFNNG SCG CY I C  D  P  C  GT I VT TNF
Sbjct:   22 GWLQGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNNGASCGQCYLIICNYDKAPSGCRMGTAITVTGTNF 102

HSP 2 Score: 50.8322 bits (120), Expect = 5.215e-24
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 2

Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCN  + HFD+SQP +++I  Y AG+VP+ Y++
Sbjct:  112 GGWCNTTRPHFDMSQPAWENIGIYSAGIVPILYQQ 146

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 3

Query:  141 GGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNFAHRTTPSPT 407
            GGGW  A ATFY              YGNLYSQGYG NTAALSTALFNNG SCG+C+E+KC +DPKWC  G  +I +TATNF       P+
Sbjct:   28 GGGWETAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPS 118

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.814e-24
Identity = 37/89 (41.57%), Postives = 45/89 (50.56%), Query Frame = 3

Query:  129 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT--IMVTATN 377
            H N G    G W  A ATFY              Y +   +GYG  T A+ST LF  G  CG+CYE+KCV+ P  C  G   ++VTATN
Sbjct:   31 HRNHGKFTAGPWKQAHATFYGGRDGSGTLDGACGYKDTSKEGYGVQTVAVSTPLFGAGAGCGACYEVKCVDSPDGCKVGAAPLVVTATN 119

HSP 2 Score: 62.003 bits (149), Expect = 8.814e-24
Identity = 23/35 (65.71%), Postives = 30/35 (85.71%), Query Frame = 2

Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP++HFDLS P F  IAQ +AG+VP++Y+R
Sbjct:  132 GGWCNPPREHFDLSMPAFLQIAQEKAGIVPISYRR 166

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.762e-23
Identity = 52/93 (55.91%), Postives = 61/93 (65.59%), Query Frame = 3

Query:  138 GGGGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC---VNDPKWCLPGTIMVTATNFAHRTTPSPT 407
            GGGGW +A ATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C         CLPG+++VTATNF       P+
Sbjct:   60 GGGGWSSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEVRCDAGGGGSHSCLPGSVVVTATNFCPPNNALPS 152

HSP 2 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 2

Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKRYA 523
            FC          GGWCNPP+ HFD+SQPVFQ IA ++AG+VPV+Y+R A
Sbjct:  143 FCPPNNALPSDDGGWCNPPRAHFDMSQPVFQRIALFKAGIVPVSYRRVA 191

[Close]

BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.708e-22
Identity = 40/80 (50.00%), Postives = 43/80 (53.75%), Query Frame = 3

Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            W+   ATFY              YGNLY QGYG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQGYGINNAALSTPLFNDGASCGQCYLIICDYSKAPDWCKLGKAITVTGTNY 102

HSP 2 Score: 50.8322 bits (120), Expect = 2.708e-22
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 2

Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCN  + HFD+SQP +++I  Y AG++P+ Y++
Sbjct:  112 GGWCNATRPHFDMSQPAWENIGIYNAGIIPILYQQ 146

The following BLAST results are available for this feature:

BLAST of CK934531 vs. ExPASy Swiss-Prot

BLAST of CK934531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
EXP30_ORYSJ	6.326e-25	48.72	Putative expansin-A30 OS=Oryza sativa subsp. japon...	[more]
EXP18_ARATH	6.332e-25	46.91	Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=...	[more]
EXP16_ARATH	6.350e-25	59.34	Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=...	[more]
EXP25_ORYSJ	1.817e-24	50.00	Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX...	[more]
EXPA7_ARATH	4.002e-24	44.87	Expansin-A7 OS=Arabidopsis thaliana GN=EXPA7 PE=2 ...	[more]
EXP18_ORYSJ	5.215e-24	54.32	Expansin-A18 OS=Oryza sativa subsp. japonica GN=EX...	[more]
EXPA6_ARATH	7.021e-24	57.14	Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ...	[more]
EXP32_ORYSJ	8.814e-24	41.57	Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX...	[more]
EXPA5_ORYSJ	7.762e-23	55.91	Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP...	[more]
EXP19_ORYSJ	2.708e-22	50.00	Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX...	[more]

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Properties


Property Name	Value
Genbank description	CGF1004229_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H11 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CK934531 ID=CK934531; Name=CK934531; organism=Citrus sinensis; type=EST; length=725bp
GGGGACTCAACTGCCTCACATTTCCTCTCTCTCTTTCTCTACTCTGCTTC
TGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTT
GGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGT
GGATCAATGCTCGTGCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACT
ATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGCCAGGGTTATGGAAC
GAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTG
GGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCC
GGCACCATTATGGTCACAGCTACCAATTTTGCCCACCGAACAACGCCCTC
CCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCT
CTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCC
CTGTAGCTTACAAGAGGTATGCTCTCTTGGTTTTAAGCTCAACAAGTGGT
AATTAATGTTCGTTAACTAGAGATTAAAACCATACTCTTATATTGTCCCC
GCTTACTATTGCTCTAGTCTAGTGGCCCAATGCTTTTATTGATTGTGATT
TGTGGTCTAGCCCAAGATTTTACTTTATTTCCCACTAATTTATTCATGGT
GGTTTTTTTCCCCCAAAAAAAAAAA