CK934531

Overview
NameCK934531
Unique NameCK934531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CK934531_ssr25 microsatellite CK934531_ssr25:25..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.221e-21
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 3
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT-IMVTATNF 380
            W +A+A++Y              +G+L   GYG  T  LSTALF  G +CG CYE+KCV+D K+CLPGT I+VTATNF
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNF 109          

HSP 2 Score: 45.0542 bits (105), Expect = 2.221e-21
Identity = 20/47 (42.55%), Postives = 26/47 (55.32%), Query Frame = 2
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GG CNPP  HF L    F+ IA ++AGV+P+ Y+R
Sbjct:  109 FCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRR 155          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.886e-21
Identity = 36/78 (46.15%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGT-IMVTATNF 380
            W  ARAT+Y              YG+L   GYG  T  LS  LF  G  CG+C+E++CV+D +WC+PGT I++TATNF
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNF 117          

HSP 2 Score: 44.2838 bits (103), Expect = 2.886e-21
Identity = 20/47 (42.55%), Postives = 26/47 (55.32%), Query Frame = 2
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GG CNPP +HF L    F+ IA ++AG +PV Y+R
Sbjct:  117 FCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRR 163          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.761e-21
Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 3
Query:  147 GWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            GWI A AT+Y              Y N Y  G+G +TAALS  LF +G SCG CY+++C    DPKWCL G  + VTATNF
Sbjct:   26 GWIRAHATYYGVNDSPASLGGACGYDNPYHAGFGAHTAALSGELFRSGESCGGCYQVRCDFPADPKWCLRGAAVTVTATNF 106          

HSP 2 Score: 44.2838 bits (103), Expect = 3.761e-21
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 2
Query:  416 GWCNPPQQHFDLSQPVFQHIAQY-RAGVVPVAYKR 517
            GWCN P+ HFD+S P F  IA+    G+VPV Y+R
Sbjct:  114 GWCNLPRHHFDMSSPAFFRIARRGNEGIVPVFYRR 148          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 8.268e-21
Identity = 38/77 (49.35%), Postives = 48/77 (62.34%), Query Frame = 3
Query:  150 WINARATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATN 377
            W +ARA +Y               YG+L   GYG  TAALSTALFN+G SCG+CYEI C  +P+ CL G+I +TAT+
Sbjct:   45 WYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATD 121          

HSP 2 Score: 44.669 bits (104), Expect = 8.268e-21
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 2
Query:  419 WCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            WC  P +HFDLS P+F  IAQ +A +VPV Y+R
Sbjct:  129 WCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRR 161          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.403e-20
Identity = 39/80 (48.75%), Postives = 42/80 (52.50%), Query Frame = 3
Query:  150 WINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKC--VNDPKWCLPG-TIMVTATNF 380
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG CY I C     P WC  G  I VT TN+
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY 102          

HSP 2 Score: 48.521 bits (114), Expect = 1.403e-20
Identity = 17/35 (48.57%), Postives = 27/35 (77.14%), Query Frame = 2
Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCN  + +FD+SQP +++I  Y AG+VP+ Y++
Sbjct:  103 GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQ 137          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 57.7658 bits (138), Expect = 4.525e-18
Identity = 26/47 (55.32%), Postives = 33/47 (70.21%), Query Frame = 3
Query:  243 YGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATN 377
            Y T TAALST LF +G  CG CYE++CV  P WC PG  ++++T TN
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTN 130          

HSP 2 Score: 54.6842 bits (130), Expect = 4.525e-18
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 2
Query:  413 GGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            GGWCNPP+ HFD++ P F  +AQ  AG+VPV Y+R
Sbjct:  143 GGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRR 177          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.899e-18
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  219 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNF 380
            YG+L    YG  TA +S ALF  G +CG CYE++CVN   WCL G  T++VTAT+F
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDF 112          

HSP 2 Score: 48.521 bits (114), Expect = 5.899e-18
Identity = 18/47 (38.30%), Postives = 29/47 (61.70%), Query Frame = 2
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCN P++HF++S+  F  +A+ +A +VPV ++R
Sbjct:  112 FCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRR 158          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.144e-17
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 3
Query:  219 YGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPG--TIMVTATNF 380
            YG+L    +   +A LS  LFN G SCG+C E++CVN  +WCL G  +++VTAT+F
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDF 108          

HSP 2 Score: 47.3654 bits (111), Expect = 8.144e-17
Identity = 19/47 (40.43%), Postives = 27/47 (57.45%), Query Frame = 2
Query:  377 FCXXXXXXXXXXGGWCNPPQQHFDLSQPVFQHIAQYRAGVVPVAYKR 517
            FC          GGWCN P++H +LS   F  IA+ RA ++P+ Y+R
Sbjct:  108 FCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRR 154          
BLAST of CK934531 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.211e-12
Identity = 35/89 (39.33%), Postives = 45/89 (50.56%), Query Frame = 3
Query:  129 HANGG----GGWINARATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCVNDPKWCLPGTIMVTATNFA 383
            H N G    G W++  ATFY               G   + GYG  TAA+S ALF+NG  CG+CYE+K  +        T++VTATN A
Sbjct:   71 HVNHGRYKCGPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQA 152          

HSP 2 Score: 37.7354 bits (86), Expect = 2.211e-12
Identity = 15/29 (51.72%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  437 QHFDLSQPVFQHIAQYRAGVVPVAYKRYA 523
            +HFDL+ P F  IA+ + GVVPV+Y++ A
Sbjct:  162 EHFDLTMPAFLSIAEEKLGVVPVSYRKVA 190          
The following BLAST results are available for this feature:
BLAST of CK934531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXP10_ORYSJ2.221e-2150.00Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP13_ARATH2.886e-2146.15Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP12_ARATH3.761e-2148.15Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP21_ARATH8.268e-2149.35Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP20_ORYSJ1.403e-2048.75Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ4.525e-1855.32Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ5.899e-1853.57Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH8.144e-1748.21Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP26_ORYSJ2.211e-1239.33Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_H11 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934531 ID=CK934531; Name=CK934531; organism=Citrus sinensis; type=EST; length=725bp
GGGGACTCAACTGCCTCACATTTCCTCTCTCTCTTTCTCTACTCTGCTTC
TGGGCTTCCAATTTCTCCAAGAAAATGTATTTTGCTGGGTTTTTCTCGTT
GGGTTTCCTTGCATTGGTGTCCTCCGTTCATGCTAATGGAGGCGGTGGGT
GGATCAATGCTCGTGCCACTTTCTATGGTGGTGGCGATGCTTCAGGGACT
ATGGGTGGGGCTTGTGGCTATGGGAATCTGTATAGCCAGGGTTATGGAAC
GAACACTGCAGCCTTGAGCACGGCTTTGTTCAACAACGGTTTGAGCTGTG
GGTCTTGCTATGAGATTAAGTGTGTTAATGACCCCAAATGGTGCTTGCCC
GGCACCATTATGGTCACAGCTACCAATTTTGCCCACCGAACAACGCCCTC
CCCAACAATGCAGGCGGTTGGTGCAATCCTCCGCAGCAACATTTTGATCT
CTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTGGAGTTGTCC
CTGTAGCTTACAAGAGGTATGCTCTCTTGGTTTTAAGCTCAACAAGTGGT
AATTAATGTTCGTTAACTAGAGATTAAAACCATACTCTTATATTGTCCCC
GCTTACTATTGCTCTAGTCTAGTGGCCCAATGCTTTTATTGATTGTGATT
TGTGGTCTAGCCCAAGATTTTACTTTATTTCCCACTAATTTATTCATGGT
GGTTTTTTTCCCCCAAAAAAAAAAA
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