CK934532

Overview
NameCK934532
Unique NameCK934532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10040 contig Csv1_Contig10040:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28
Identity = 92/249 (36.95%), Postives = 118/249 (47.39%), Query Frame = 2
Query:   20 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            +S K    T  + G  T A  +   SS  +F+     P  A     Y+ +A        P YL G  PGD+G+D   L   PE  +RY+E ELIH RWAML   G   PE L       G   W +A       GG   YLGNP  V    +     ++ + +  +E  R       +     YPG +FDPLG + DP  F E KVKEIKNGRLA  +  GF V Q+   G GP++NL  HLA+P  NN
Sbjct:    6 ASRKALQVTCKATGKKTAAKAAAPKSSGVEFYG----PNRAKWLGPYSENAT-------PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNLDDHLANPTVNN 241          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.523e-28
Identity = 80/196 (40.82%), Postives = 101/196 (51.53%), Query Frame = 2
Query:  188 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            E  P YL G  PGD+G+D   +   PE   + +E E+IHCRWAML   G + PE L       G   W +A       GG   Y GNP  +   ++  I   + + +  +E  R          DP     PGGAFDPLG + DP+   E KVKEIKNGRLA+ +  GF V Q+   G GP+ENL  HLADP  NN
Sbjct:   64 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGG-LDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 254          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27
Identity = 81/196 (41.33%), Postives = 107/196 (54.59%), Query Frame = 2
Query:  179 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVE-YQRSMEKDPE--KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            + G P P YL G  PGD+G+D   L   PE   + +E E+IHCRWA+    G + PE L       G G W +A       GG  ++ GNP  V   ++  I   + + +  VE Y  +  +  E     Y GG+FDPLG   DP++F E KVKEIKNGRLA+ +  GF V Q+   G GP+ENLA HL DP +NN
Sbjct:   60 LSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGG-LSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLTDPVNNN 252          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27
Identity = 86/226 (38.05%), Postives = 112/226 (49.56%), Query Frame = 2
Query:  125 SLPAAANATSKYAMSAD----------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ---AQEW-----AAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            S    A A SK + SA+          W      P    G  PGD+G+D   L   PE  +RY+E ELIH R  +L   G++ PE L   + ++   A  W     A    G   YLGNP  +    +   L ++ + +  VE  R +   P  +     YPG AFDPLG + DP  F E KVKEIKNGRLA+ A +GF V Q+   G GP+ENL  HLA+P  NN
Sbjct:   39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR-VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAIVTGKGPIENLTDHLANPAENN 262          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27
Identity = 98/275 (35.64%), Postives = 131/275 (47.64%), Query Frame = 2
Query:   32 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMP-----GEPRP---------PYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALG-LGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733
            MA+  L+S    T A  +V  S     F A SLP++   + K  + A   P     G  RP          YLDGS PGD+GFDPL L + PE    + E       E+I+ R+AML   G + PE LG +G   Q    A    G     G    W    T+ V+E   + F E++R        SM K                 YPGG F +PLGF KD +  +E K+KE+KNGRLA+LA +G+ + Q    G GP +NL  H+ADP +NN+
Sbjct:    1 MATQALVSSSSLTFAAEAVRQS-----FRARSLPSSVGCSRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHVADPVNNNV 268          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.230e-26
Identity = 92/269 (34.20%), Postives = 127/269 (47.21%), Query Frame = 2
Query:   68 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN-------------------------------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 736
            TTA      ++  K  T+    +      KY   A W+P   RP +LDGS PGD GFDPL L +        V EN                                     L R++E ELIH RWAMLA  G LV EA    +WV+A     V    A+Y G  +P+ ++  ++ IE + +   E+ R+ E +PEK+ YPGG FDPL   S+D ++    K  EIK+ RLA+++F G+ V Q+   G G L +LA   AD  +N  G
Sbjct:   17 TTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA---GKVELDGASYAGLSLPF-SITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGV-QALSTGEGALGSLA-KFADGLNNGKG 279          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.230e-26
Identity = 95/257 (36.96%), Postives = 116/257 (45.14%), Query Frame = 2
Query:   32 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            MAS  + +   A  A    LS        +     AA    +  M  D   G  R           P YL+G  PGD+G+D   L   PE   R +  E+IH RWAML   G + PE L     V+ +E  W          G   YLGNP  V   ++  +L  + L +  VE  R    D        YPGG  FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HL DP  NN
Sbjct:    1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLFDHLDDPVANN 256          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.607e-26
Identity = 91/263 (34.60%), Postives = 125/263 (47.53%), Query Frame = 2
Query:   35 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR----------------SMEK------DPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733
            +S+   S   A     S +S S ++  + V   A+     + A    W   +    YLDG  PGDFGFDPL L + PE    + E       E+I+ R+AML   G + PE LG    + Q    A    G     G    W    T+ V+E   + F E++R                 +EK      DP    YPGG  F+PLGF KD +  +E K+KEIKNGRLA+LA +G+ + Q+   G GP +NL  HLADP +NN+
Sbjct:    9 SSSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNLLDHLADPVNNNV 266          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.816e-25
Identity = 84/223 (37.67%), Postives = 107/223 (47.98%), Query Frame = 2
Query:  140 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            A  ++++ MS D   G  R           P YL+G  PGD+G+D   L   PE   + +  E+IH RWAML   G + PE L    WV+      V           G   YLGNP  V   ++  +L  + + +  VE  R             YPGG  FDPLG + DP  F E KVKEIKNGRLA+ +  GF V Q+   G GPLENL  HL +P  NN
Sbjct:   34 AMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLE--KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253          
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24
Identity = 78/193 (40.41%), Postives = 97/193 (50.26%), Query Frame = 2
Query:  197 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730
            P YL G   G        L   PE   + +E E+IH RWAML   G + PE L       G   W +A       GG   YLGNP  +   ++  I   + + +  VE  R          DP    YPGG+FDPLG + DP+   E KVKE+KNGRLA+ +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:   65 PSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 244          
The following BLAST results are available for this feature:
BLAST of CK934532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
CB2_CHLRE1.716e-2836.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_PINTH6.523e-2840.82Chlorophyll a-b binding protein type I, chloroplas... [more]
CB48_MAIZE1.453e-2741.33Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2_DUNSA1.453e-2738.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PEA5.522e-2735.64Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB29_CHLRE1.230e-2634.20Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB23_HORVU1.230e-2636.96Chlorophyll a-b binding protein of LHCII type III,... [more]
CB13_SOLLC1.607e-2634.60Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_SOLLC8.816e-2537.67Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB22_SOYBN5.714e-2440.41Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_H12 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934532 ID=CK934532; Name=CK934532; organism=Citrus sinensis; type=EST; length=750bp
GGGGGCCCACCCCTCACACAGCTCTCCCAAAATGGCTTCCAACACTCTGA
TGAGCTGCGGCATCGCCACCACCGCTTTCCCTTCGGTCCTCTCATCTTCT
AAATCCAAATTCTTTACTGCAGTTTCACTTCCAGCTGCCGCCAATGCAAC
CTCGAAATACGCCATGTCTGCTGACTGGATGCCCGGCGAGCCCCGGCCGC
CTTATCTTGATGGTTCAGCCCCAGGGGACTTTGGATTTGACCCACTTCGG
CTTGGCGAAGTTCCTGAGAACCTTGAGAGATACAAGGAGTCTGAACTCAT
TCACTGCAGATGGGCTATGCTTGCTGTTCCAGGGATCTTGGTGCCAGAGG
CATTGGGATTGGGCAACTGGGTGCAGGCGCAAGAGTGGGCAGCAGTTCCT
GGAGGACAAGCCACATACTTAGGCAACCCTGTTCCATGGGGCACTCTCCC
CACAATTTTGGTGATTGAATTCCTTTCCATTGCCTTCGTTGAGTACCAAC
GCAGCATGGAGAAAGACCCCGAGAAGAAGAAGTACCCCGGTGGTGCTTTC
GACCCCTTGGGCTTCTCCAAGGACCCCCAGAAGTTCGAGGAATACAAAGT
CAAGGAGATAAAAAATGGGCGTTTGGCATTGTTGGCATTTGTGGGTTTCT
GCGTGCAACAATCAGCATATCCGGGCACAGGACCATTGGAGAACTTGGCA
ACTCACTTGGCTGATCCATGGCACAACAACATTGGGGACGTTATTATCCC
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