CK934532
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.716e-28 Identity = 92/249 (36.95%), Postives = 118/249 (47.39%), Query Frame = 2 Query: 20 SSPKMASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQR---SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730 +S K T + G T A + SS +F+ P A Y+ +A P YL G PGD+G+D L PE +RY+E ELIH RWAML G PE L G W +A GG YLGNP V + ++ + + +E R + YPG +FDPLG + DP F E KVKEIKNGRLA + GF V Q+ G GP++NL HLA+P NN Sbjct: 6 ASRKALQVTCKATGKKTAAKAAAPKSSGVEFYG----PNRAKWLGPYSENAT-------PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGG-LDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFV-QAIVTGKGPVQNLDDHLANPTVNN 241
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 6.523e-28 Identity = 80/196 (40.82%), Postives = 101/196 (51.53%), Query Frame = 2 Query: 188 EPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730 E P YL G PGD+G+D + PE + +E E+IHCRWAML G + PE L G W +A GG Y GNP + ++ I + + + +E R DP PGGAFDPLG + DP+ E KVKEIKNGRLA+ + GF V Q+ G GP+ENL HLADP NN Sbjct: 64 EGTPSYLTGEFPGDYGWDTAAVSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGLKFGEAVWFKAGAQIFSEGG-LDYAGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGTLGEGLDP---LLPGGAFDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHLADPVANN 254
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27 Identity = 81/196 (41.33%), Postives = 107/196 (54.59%), Query Frame = 2 Query: 179 MPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVE-YQRSMEKDPE--KKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730 + G P P YL G PGD+G+D L PE + +E E+IHCRWA+ G + PE L G G W +A GG ++ GNP V ++ I + + + VE Y + + E Y GG+FDPLG DP++F E KVKEIKNGRLA+ + GF V Q+ G GP+ENLA HL DP +NN Sbjct: 60 LSGSP-PSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGG-LSHPGNPSLVHAQSILAIWACQVVLMGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPIENLADHLTDPVNNN 252
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.453e-27 Identity = 86/226 (38.05%), Postives = 112/226 (49.56%), Query Frame = 2 Query: 125 SLPAAANATSKYAMSAD----------WMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQ---AQEW-----AAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKK----YPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730 S A A SK + SA+ W P G PGD+G+D L PE +RY+E ELIH R +L G++ PE L + ++ A W A G YLGNP + + L ++ + + VE R + P + YPG AFDPLG + DP F E KVKEIKNGRLA+ A +GF V Q+ G GP+ENL HLA+P NN Sbjct: 39 STKKGAKAVSKSSSSANQFYGPDATSGWDLQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYR-VNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFV-QAIVTGKGPIENLTDHLANPAENN 262
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.522e-27 Identity = 98/275 (35.64%), Postives = 131/275 (47.64%), Query Frame = 2 Query: 32 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMP-----GEPRP---------PYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALG-LGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR--------SMEKD-----------PEKKKYPGGAF-DPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733 MA+ L+S T A +V S F A SLP++ + K + A P G RP YLDGS PGD+GFDPL L + PE + E E+I+ R+AML G + PE LG +G Q A G G W T+ V+E + F E++R SM K YPGG F +PLGF KD + +E K+KE+KNGRLA+LA +G+ + Q G GP +NL H+ADP +NN+ Sbjct: 1 MATQALVSSSSLTFAAEAVRQS-----FRARSLPSSVGCSRKGLVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFI-QGLVTGVGPYQNLLDHVADPVNNNV 268
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 120.168 bits (300), Expect = 1.230e-26 Identity = 92/269 (34.20%), Postives = 127/269 (47.21%), Query Frame = 2 Query: 68 TTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGE--------VPEN-------------------------------------LERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQRSMEKDPEKKKYPGGAFDPLGF-SKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 736 TTA ++ K T+ + KY A W+P RP +LDGS PGD GFDPL L + V EN L R++E ELIH RWAMLA G LV EA +WV+A V A+Y G +P+ ++ ++ IE + + E+ R+ E +PEK+ YPGG FDPL S+D ++ K EIK+ RLA+++F G+ V Q+ G G L +LA AD +N G Sbjct: 17 TTATKPAPKATTKKVATSTGTRSGGVGYRKYQGDALWLPNTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEA---GKVELDGASYAGLSLPF-SITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGV-QALSTGEGALGSLA-KFADGLNNGKG 279
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.230e-26 Identity = 95/257 (36.96%), Postives = 116/257 (45.14%), Query Frame = 2 Query: 32 MASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQE--WAAVPG-----GQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730 MAS + + A A LS + AA + M D G R P YL+G PGD+G+D L PE R + E+IH RWAML G + PE L V+ +E W G YLGNP V ++ +L + L + VE R D YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL DP NN Sbjct: 1 MASTIMAAASRAVVAKTPFLSGQGRAASASPLRDIAAATNGRITMGNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLFDHLDDPVANN 256
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.607e-26 Identity = 91/263 (34.60%), Postives = 125/263 (47.53%), Query Frame = 2 Query: 35 ASNTLMSCGIATTAFPSVLSSSKSKFFTAVSLPAAANATSKYAMSADWMPGEPRPPYLDGSAPGDFGFDPLRLGEVPENLERYKE------SELIHCRWAMLAVPGILVPEALGLGNWV-QAQEWAAVPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEYQR----------------SMEK------DPEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNI 733 +S+ S A S +S S ++ + V A+ + A W + YLDG PGDFGFDPL L + PE + E E+I+ R+AML G + PE LG + Q A G G W T+ V+E + F E++R +EK DP YPGG F+PLGF KD + +E K+KEIKNGRLA+LA +G+ + Q+ G GP +NL HLADP +NN+ Sbjct: 9 SSSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFI-QALVTGVGPYQNLLDHLADPVNNNV 266
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 8.816e-25 Identity = 84/223 (37.67%), Postives = 107/223 (47.98%), Query Frame = 2 Query: 140 ANATSKYAMSADWMPGEPR-----------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEWAAV---------PGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQRSMEKD---PEKKKYPGGA-FDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730 A ++++ MS D G R P YL+G PGD+G+D L PE + + E+IH RWAML G + PE L WV+ V G YLGNP V ++ +L + + + VE R YPGG FDPLG + DP F E KVKEIKNGRLA+ + GF V Q+ G GPLENL HL +P NN Sbjct: 34 AMGSARFTMSNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLE--KWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLLDHLDNPVANN 253
BLAST of CK934532 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24 Identity = 78/193 (40.41%), Postives = 97/193 (50.26%), Query Frame = 2 Query: 197 PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEAL-------GLGNWVQAQEWAAVPGGQATYLGNP--VPWGTLPTILVIEFLSIAFVEYQR------SMEKDPEKKKYPGGAFDPLGFSKDPQKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 730 P YL G G L PE + +E E+IH RWAML G + PE L G W +A GG YLGNP + ++ I + + + VE R DP YPGG+FDPLG + DP+ E KVKE+KNGRLA+ + GF V Q+ G GPLENLA HLADP +NN Sbjct: 65 PSYLTGEFHG--------LSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGG-LDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDPI---YPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 244 The following BLAST results are available for this feature:
BLAST of CK934532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CK934532 ID=CK934532; Name=CK934532; organism=Citrus sinensis; type=EST; length=750bpback to top |