CK934580

Overview
NameCK934580
Unique NameCK934580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_ARATH (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Arabidopsis thaliana GN=ndhC PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.106e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFL+ISS IP+LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_FAGEA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.444e-58
Identity = 109/120 (90.83%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFL+ISSVIPILAFL+S +LAPI K PEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLLISSVIPILAFLLSGILAPIRKDPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_CUCSA (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Cucumis sativus GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.444e-58
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFW FLIISSVIPILAFLIS VLAP++K PEKLSSYESGIEPMGDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_COFAR (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Coffea arabica GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.444e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFW FLIISS+IPILAF IS +LAPI+KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFD+LGV VFIEA IF+LILIVGLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWTFLIISSLIPILAFFISGILAPISKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDILGVSVFIEALIFVLILIVGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_CAPBU (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Capsella bursa-pastoris GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.444e-58
Identity = 108/120 (90.00%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS IP+LAFLIS VL+PI KGPEKLSSYESGI+P+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIDPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_PIPCE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Piper cenocladum GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.886e-58
Identity = 110/120 (91.67%), Postives = 115/120 (95.83%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLL++YDIFW FLIISSVIPILAFLIS VLAPIN+GPEKLSSYESGIEPMGDAW+QFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV VFIEAFIF+LI IVG VYAWRKGALEWS
Sbjct:    1 MFLLHEYDIFWTFLIISSVIPILAFLISGVLAPINEGPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEAFIFVLIPIVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_NASOF (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Nasturtium officinale GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.886e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS IP+LAF IS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFFISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_MANES (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Manihot esculenta GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.886e-58
Identity = 109/120 (90.83%), Postives = 116/120 (96.67%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFL+Y+YDIFWAFLIISSVIPILAFLIS VL+PI+KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLG+ VFIEA IF+LILIVG VYAWRKGALEWS
Sbjct:    1 MFLIYEYDIFWAFLIISSVIPILAFLISGVLSPISKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGLSVFIEALIFVLILIVGSVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_BARVE (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Barbarea verna GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.886e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS IP+LAF IS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIEAFIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFFISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3C_ARAHI (NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic OS=Arabis hirsuta GN=ndhC PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 1.886e-58
Identity = 108/120 (90.00%), Postives = 114/120 (95.00%), Query Frame = 2 
Query:  206 MFLLYKYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            MFLLY+YDIFWAFLIISS IP+LAFLIS VL+PI KGPEKLSSYESGIEP+GDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV  FIE FIF+LILI+GLVYAWRKGALEWS
Sbjct:    1 MFLLYEYDIFWAFLIISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEVFIFVLILILGLVYAWRKGALEWS 120
The following BLAST results are available for this feature:
BLAST of CK934580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3C_ARATH1.106e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_FAGEA1.444e-5890.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CUCSA1.444e-5891.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_COFAR1.444e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_CAPBU1.444e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_PIPCE1.886e-5891.67NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_NASOF1.886e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_MANES1.886e-5890.83NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_BARVE1.886e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]
NU3C_ARAHI1.886e-5890.00NAD(P)H-quinone oxidoreductase subunit 3, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934580 ID=CK934580; Name=CK934580; organism=Citrus sinensis; type=EST; length=618bp
GGGAAATAAANNNGAAGGAAGTGTAATGAAANNNGGATTCCAATCGATAA
ATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTGCGGTTCGATC
AAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACTTGACAATGAA
TTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATTCATAGGAGTT
TGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGCATTTCTAATA
ATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGC
CCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAATCGGGTATCG
AACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTATTATATGTTT
GCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTCTTTATCCATG
GGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATAGAAGCTTTCA
TTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTGGCGAAAAGGA
GCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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