CK934580

Overview
NameCK934580
Unique NameCK934580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_TETNG (NADH-ubiquinone oxidoreductase chain 3 OS=Tetraodon nigroviridis GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 2
Query:  227 DIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVF--IEAFIFMLILIVGLVYAWRKGALEWS 565
            ++    L I++++ ++  ++S  L  +    +KLS YE G +P+G A L F IR+++ A++F++FD+E   L   PW    D L  P+F  + A   +++L +GL+Y W +G LEW+
Sbjct:    2 NLLLTILFITTILSLILAIVSFWLPLMTPDYQKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWG---DQLPSPMFTLLWASALLIMLTLGLIYEWLQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_RABIT (NADH-ubiquinone oxidoreductase chain 3 OS=Oryctolagus cuniculus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 562
            L+I++ I ++   I+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA  F+ L + V I A + + IL +GL Y W +  LEW
Sbjct:    7 LLINTTISLVLVTIAFWLPQLNIYSEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAAQFNNLNL-VLIMALMLISILALGLAYEWIQKGLEW 113          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_PAROL (NADH-ubiquinone oxidoreductase chain 3 OS=Paralichthys olivaceus GN=MT-ND3 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 40/116 (34.48%), Postives = 67/116 (57.76%), Query Frame = 2
Query:  230 IFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPV--FIEAFIFMLILIVGLVYAWRKGALEWS 565
            +    + I++++  +  ++S  L  I+   EKLS YE G +PMG A L F +R+++ A++F++FD+E   L   PW    D L  P+  F  A   + +L +GL+Y W +G LEW+
Sbjct:    3 LLMTIITITALLSTILAIVSFWLPQISPDHEKLSPYECGFDPMGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWG---DQLPTPLLTFTWATAVLFLLTLGLIYEWIQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_MYTED (NADH-ubiquinone oxidoreductase chain 3 OS=Mytilus edulis GN=ND3 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  320 EKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSF----DVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 562
            EK S YE G EP+G A   F IR+++ A++FVVFDVE V L P+A  F     VLG+   + +  F+LIL VGL + +R+G+LEW
Sbjct:   33 EKCSPYECGFEPIGSARSPFSIRFFLVAVLFVVFDVEVVLLMPFAYMFFYGKSVLGI---LSSSGFLLILFVGLYHEYREGSLEW 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NUOA_BUCAI (NADH-quinone oxidoreductase subunit A OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nuoA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 41/115 (35.65%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  221 KYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            +Y  F+ F+  S  +      +S +L   +    K + +ESGI   G+  L F +++Y+ A+ FVVFDVE ++LY W++S    G   F EA +F + L++GL Y  R  AL WS
Sbjct:   10 EYLSFFMFIFFSLGLCFFMLCLSWILGGRSSSRYKNTPFESGIVSSGNTNLYFSVKFYLIAMFFVVFDVEALYLYAWSVSIKESGWIGFSEALMFGISLLLGLFYLVRIRALNWS 124          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_CYPCA (NADH-ubiquinone oxidoreductase chain 3 OS=Cyprinus carpio GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.414e-13
Identity = 40/117 (34.19%), Postives = 66/117 (56.41%), Query Frame = 2
Query:  227 DIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVP--VFIEAFIFMLILIVGLVYAWRKGALEWS 565
            ++    L I+  + ++   +S  L  +N   EKLS YE G +P+G A L F +R+++ A++F++FD+E   L   PW    D L  P   F  A   +++L +GL+Y W +G LEW+
Sbjct:    2 NLIMTILTITVALSLILATVSFWLPQMNPDAEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWG---DQLHNPTGTFFWATTVLILLTLGLIYEWTQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NUOA_PSYWF (NADH-quinone oxidoreductase subunit A OS=Psychrobacter sp. (strain PRwf-1) GN=nuoA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 35/109 (32.11%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  239 AFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            AF++ +  + I   ++  +L   ++G EK   +ESG+   G+A ++   ++Y+ A+ FV+FD+E ++LY +++S   +G   +  A IF++ L++GL+YA   GAL W+
Sbjct:   11 AFILAAIGLVIFMLVVPRLLGGRSQGTEKEEVFESGVVGAGNARIRLSAKFYLVAIFFVIFDLEALYLYAYSVSVREVGWIGYATALIFVVDLLIGLIYALSLGALNWA 119          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_DASNO (NADH-ubiquinone oxidoreductase chain 3 OS=Dasypus novemcinctus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 39/109 (35.78%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L I+  +  L  LI+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA   + +  P+   A + +L+L +GL Y W +  LEW+
Sbjct:    7 LFINMSLASLLVLIAFWLPQLNTYTEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWATQANTM-TPMLTTALVLILLLALGLAYEWLQKGLEWN 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NUOA_BUCBP (NADH-quinone oxidoreductase subunit A OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nuoA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  221 KYDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 562
            +Y  F+ F  I+  I +    IS +L   +    K + +ESGI P     +   +++Y+ A+ FV+FDVE ++LY W++S    G   FIEA IF+L L+ GL+Y      L W
Sbjct:   10 QYWAFFTFFFIAVSICVFMLSISWILGGRSSSRYKNTPFESGIVPTNTTNMYCSVKFYLVAIYFVLFDVEALYLYAWSVSIVECGWIGFIEALIFILFLLSGLIYLISSKLLVW 123          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_ALLMA (NADH-ubiquinone oxidoreductase chain 3 OS=Allomyces macrogynus GN=ND3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 33/108 (30.56%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  233 FWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGAL 556
            +  +++ + V+ +   L+S +L+      EK+S+YE G  P+GDA  +F + +Y+ A++F++FD+E VF+ P+A     + +       IF++IL +G +Y +  GA+
Sbjct:    3 YLVYIVFTIVLTVGLILVSYLLSQAQPDSEKVSAYECGFSPLGDARQKFDVSFYLIAILFIIFDLEVVFILPFASVIHNVSLLGGWITIIFLVILTIGFIYEFVSGAI 110          
The following BLAST results are available for this feature:
BLAST of CK934580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_TETNG1.848e-1333.33NADH-ubiquinone oxidoreductase chain 3 OS=Tetraodo... [more]
NU3M_RABIT1.848e-1337.96NADH-ubiquinone oxidoreductase chain 3 OS=Oryctola... [more]
NU3M_PAROL1.848e-1334.48NADH-ubiquinone oxidoreductase chain 3 OS=Paralich... [more]
NU3M_MYTED1.848e-1348.24NADH-ubiquinone oxidoreductase chain 3 OS=Mytilus ... [more]
NUOA_BUCAI2.414e-1335.65NADH-quinone oxidoreductase subunit A OS=Buchnera ... [more]
NU3M_CYPCA2.414e-1334.19NADH-ubiquinone oxidoreductase chain 3 OS=Cyprinus... [more]
NUOA_PSYWF3.152e-1332.11NADH-quinone oxidoreductase subunit A OS=Psychroba... [more]
NU3M_DASNO3.152e-1335.78NADH-ubiquinone oxidoreductase chain 3 OS=Dasypus ... [more]
NUOA_BUCBP5.377e-1335.09NADH-quinone oxidoreductase subunit A OS=Buchnera ... [more]
NU3M_ALLMA5.377e-1330.56NADH-ubiquinone oxidoreductase chain 3 OS=Allomyce... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934580 ID=CK934580; Name=CK934580; organism=Citrus sinensis; type=EST; length=618bp
GGGAAATAAANNNGAAGGAAGTGTAATGAAANNNGGATTCCAATCGATAA
ATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTGCGGTTCGATC
AAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACTTGACAATGAA
TTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATTCATAGGAGTT
TGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGCATTTCTAATA
ATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGC
CCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAATCGGGTATCG
AACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTATTATATGTTT
GCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTCTTTATCCATG
GGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATAGAAGCTTTCA
TTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTGGCGAAAAGGA
GCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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