CK934580

Overview
NameCK934580
Unique NameCK934580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_ONCMA (NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhynchus masou GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  248 IISSVIPILAFL--ISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVP--VFIEAFIFMLILIVGLVYAWRKGALEWS 565
            II+  I + A L  IS  L  I+   EKLS YE G +P+G A L F +R+++ A++F++FD+E   L   PW    D L  P    + +   + +L +GL+Y W +G LEW+
Sbjct:    7 IITITITLSAVLATISFWLPQISPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWG---DQLNTPALTLVWSTAVLALLTLGLIYEWTQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_NELNE (NADH-ubiquinone oxidoreductase chain 3 OS=Nelsonia neotomodon GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 36/109 (33.03%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            ++I++ +  +  LI+  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWAM    +   + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 MLINTTLSFVLILIAFWLPQLNIYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPMPWAMQTQDIKT-MTLTAFILLSVLALGLAYEWTQKGLEWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_DROME (NADH-ubiquinone oxidoreductase chain 3 OS=Drosophila melanogaster GN=mt:ND3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 35/115 (30.43%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  224 YDIFWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVF-IEAFIFMLILIVGLVYAWRKGALEWS 565
            + I +  L+I  +  I+ FL S +        EK S +E G +P   + L F +R+++  ++F++FDVE   + P  +      + ++ I + IF+LIL++GL + W +G L WS
Sbjct:    2 FSIIFIALLILLITTIVMFLASILSKKALIDREKSSPFECGFDPKSSSRLPFSLRFFLITIIFLIFDVEIALILPMIIIMKYSNIMIWTITSIIFILILLIGLYHEWNQGMLNWS 116          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_CHICK (NADH-ubiquinone oxidoreductase chain 3 OS=Gallus gallus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 40/107 (37.38%), Postives = 60/107 (56.07%), Query Frame = 2
Query:  272 LAFLISAVLAPIN-------KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L+FL+SA L  +N          EKLS YE G +P+G A L F IR+++ A++F++FD+E   L   PWA+      +     A   + +L  GL+Y W +G LEW+
Sbjct:   10 LSFLLSAALTTMNFWLAQMAPDTEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIQL-AHPMMTLTWATTIIALLTFGLIYEWTQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_SALSA (NADH-ubiquinone oxidoreductase chain 3 OS=Salmo salar GN=MT-ND3 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 2
Query:  248 IISSVIPILAFLISAVLAPIN-------KGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAF--IFMLILIVGLVYAWRKGALEWS 565
            +I+++I I    +SAVLA I+          EKLS YE G +P+G A L F +R+++ A++F++FD+E   L   PW    D L  P    A+    + +L +GL+Y W +G LEW+
Sbjct:    3 LITTIIAI-TITLSAVLATISFWLPQMTPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWG---DQLTTPALTLAWSAAVLALLTLGLIYEWTQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_ONCNE (NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhynchus nerka GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 42/112 (37.50%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  248 IISSVIPILAFL--ISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVP--VFIEAFIFMLILIVGLVYAWRKGALEWS 565
            II+  I + A L  IS  L  I+   EKLS YE G +P+G A L F +R+++ A++F++FD+E   L   PW    D L  P    + +   + +L +GL+Y W +G LEW+
Sbjct:    7 IITITITLSAVLATISFWLPQISPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWG---DQLNAPTLTLLWSTAVLALLTLGLIYEWTQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_ONCMY (NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhynchus mykiss GN=MT-ND3 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 43/112 (38.39%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  248 IISSVIPILAFL--ISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVP--VFIEAFIFMLILIVGLVYAWRKGALEWS 565
            II+  I + A L  IS  L  I+   EKLS YE G +P+G A L F +R+++ A++F++FD+E   L   PW    D L  P    I +   + +L +GL+Y W +G LEW+
Sbjct:    7 IITITITLSAVLATISFWLPQISPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWG---DQLHTPTLTLIWSTAVLALLTLGLIYEWTQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_ONCKI (NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhynchus kisutch GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  248 IISSVIPILAFL--ISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVP--VFIEAFIFMLILIVGLVYAWRKGALEWS 565
            II+  I + A L  +S  L  I+   EKLS YE G +P+G A L F +R+++ A++F++FD+E   L   PW    D L  P    + +   + +L +GL+Y W +G LEW+
Sbjct:    7 IITITITLSAVLATVSFWLPQISPDAEKLSPYECGFDPLGSARLPFSLRFFLIAILFLLFDLEIALLLPLPWG---DQLNTPTLTLVWSTAVLALLTLGLIYEWTQGGLEWA 115          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_ANOGA (NADH-ubiquinone oxidoreductase chain 3 OS=Anopheles gambiae GN=mt:ND3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.485e-12
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  248 IISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVF-IEAFIFMLILIVGLVYAWRKGALEWS 565
            II+ V+ +LA L+S          EK S +E G +PM  + L F +R+++ A++F++FDVE   L P  M      +  + I +  F+ IL++GL + W +GALEW+
Sbjct:   13 IITIVVMMLATLLSKKTL---LDREKCSPFECGFDPMNSSRLPFSLRFFLIAIIFLIFDVEIALLLPMIMIIKTSNLMNWTITSLFFIFILLIGLYHEWNQGALEWN 116          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_PERSJ (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus sejugis GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.552e-12
Identity = 34/109 (31.19%), Postives = 63/109 (57.80%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L+++  + +L  +++     +N   EK + YE G +PMG A L F +++++ A+ F++FD+E   L   PWA+      + + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 LLVNITLSMLLIIVAFWFFQLNLYTEKANPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQMYNTNI-MMLTAFILISVLALGLAYEWLQKGLEWT 114          
The following BLAST results are available for this feature:
BLAST of CK934580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_ONCMA2.669e-1237.50NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhyn... [more]
NU3M_NELNE2.669e-1233.03NADH-ubiquinone oxidoreductase chain 3 OS=Nelsonia... [more]
NU3M_DROME2.669e-1230.43NADH-ubiquinone oxidoreductase chain 3 OS=Drosophi... [more]
NU3M_CHICK2.669e-1237.38NADH-ubiquinone oxidoreductase chain 3 OS=Gallus g... [more]
NU3M_SALSA3.485e-1236.75NADH-ubiquinone oxidoreductase chain 3 OS=Salmo sa... [more]
NU3M_ONCNE3.485e-1237.50NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhyn... [more]
NU3M_ONCMY3.485e-1238.39NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhyn... [more]
NU3M_ONCKI3.485e-1236.61NADH-ubiquinone oxidoreductase chain 3 OS=Oncorhyn... [more]
NU3M_ANOGA3.485e-1235.51NADH-ubiquinone oxidoreductase chain 3 OS=Anophele... [more]
NU3M_PERSJ4.552e-1231.19NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934580 ID=CK934580; Name=CK934580; organism=Citrus sinensis; type=EST; length=618bp
GGGAAATAAANNNGAAGGAAGTGTAATGAAANNNGGATTCCAATCGATAA
ATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTGCGGTTCGATC
AAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACTTGACAATGAA
TTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATTCATAGGAGTT
TGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGCATTTCTAATA
ATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGC
CCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAATCGGGTATCG
AACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTATTATATGTTT
GCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTCTTTATCCATG
GGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATAGAAGCTTTCA
TTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTGGCGAAAAGGA
GCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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