CK934580

Overview
NameCK934580
Unique NameCK934580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_PERGO (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus gossypinus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 32/108 (29.63%), Postives = 60/108 (55.56%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGV-PVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L+++  + IL   ++  L  +N   EK + YE G +PM  A L F +++++ A+ F+++D+E   L P   +  +     + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 LMVNITLSILLITVAFWLPQLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLYDLEIALLLPLPWAIQMYNTNTMMLTAFILVSVLALGLAYEWTQKGLEWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_ONYLE (NADH-ubiquinone oxidoreductase chain 3 OS=Onychomys leucogaster GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 34/109 (31.19%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L ++ ++     LI+  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L P  WA+    + + + + +FI + +L +GL Y W +  LEW+
Sbjct:    7 LTVNMMLSTCLILIAFWLPQLNLYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLSWAIQMPNINI-MTLTSFILVSVLALGLAYEWLQKGLEWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_NEOFL (NADH-ubiquinone oxidoreductase chain 3 OS=Neotoma floridana GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            ++I+  + +L   I+  L  +N   EK + Y+ G +PM  A L F +++++ A+ F++FD+E   L   PWA+    +   + + AFI + IL +GL Y W +  LEW+
Sbjct:    7 MLINITLSLLLISIAFWLPQLNIYTEKANPYDWGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPIPWAIQIHSINT-MMLTAFILVTILALGLAYEWIQKGLEWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_LEMCA (NADH-ubiquinone oxidoreductase chain 3 OS=Lemur catta GN=MT-ND3 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 562
            L  S  + +L   I+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA   + L + + + A + + IL  GL Y W +  LEW
Sbjct:    7 LTTSITLTLLLVTIAFWLPQLNVYTEKYSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLKLMLTV-ALVLITILAAGLAYEWLQKGLEW 113          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_FELCA (NADH-ubiquinone oxidoreductase chain 3 OS=Felis catus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 37/109 (33.94%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L+ ++++  L  LI+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA   D L   +   A + + +L   L Y W +  LEW+
Sbjct:    7 LLTNTLLSTLLVLIAFWLPQLNIYAEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTDKLPT-MLTMALLLISLLAASLAYEWTQKGLEWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_AVACL (NADH-ubiquinone oxidoreductase chain 3 OS=Avahi cleesei GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.259e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEW 562
            L+    + +L  +I+  L  +N   EK SSYE G +PMG A L F +++++ A+ F++FD+E   L   PWA     L + +   A + + IL  GL Y W +  LEW
Sbjct:    7 LMTDVALALLLVMIAFWLPQLNIYTEKYSSYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTTNLKL-MLTMALLLISILAAGLAYEWSQKGLEW 113          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_SIGOC (NADH-ubiquinone oxidoreductase chain 3 OS=Sigmodon ochrognathus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYP--WAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L I + + ++   I+  L  +N   EK   YE G +P+  A L F +++++ A+ F++FD+E   L P  WA+    L   + + +FI + +L +GL+Y W    LEW+
Sbjct:    7 LFIDASLSLILISIAFWLPQLNIYTEKAGPYECGFDPLSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQIPKLSA-MMVTSFILISVLALGLMYEWMNKGLEWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_RHIPI (NADH-ubiquinone oxidoreductase chain 3 OS=Rhinolophus pumilus GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 2
Query:  233 FWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            F   L+ ++++ +L   I+  L   N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA   + L V +   A + + +L + L Y W +  LEW+
Sbjct:    3 FMLTLLTNTLLALLLVTIAFWLPQTNVYSEKSSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQANNLEV-MLTTALLLISLLAISLAYEWSQKGLEWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_HUMAN (NADH-ubiquinone oxidoreductase chain 3 OS=Homo sapiens GN=MT-ND3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 31/112 (27.68%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  233 FWAFLIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVPVFI-EAFIFMLILIVGLVYAWRKGALEWS 565
            F   L+I++++ +L  +I+  L  +N   EK + YE G +PM  A + F +++++ A+ F++FD+E   L P   +     +P+ +  + + ++IL + L Y W +  L+W+
Sbjct:    3 FALILMINTLLALLLMIITFWLPQLNGYMEKSTPYECGFDPMSPARVPFSMKFFLVAITFLLFDLEIALLLPLPWALQTTNLPLMVMSSLLLIIILALSLAYEWLQKGLDWT 114          
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_HIPAM (NADH-ubiquinone oxidoreductase chain 3 OS=Hippopotamus amphibius GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 37/109 (33.94%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L+ ++ +  L  LI+  L  +N   EK S YE G +PMG A L F +++++ A+ F++FD+E   L   PWA     L   + I A   + +L + L Y W +  LEW+
Sbjct:    7 LLTNTALASLLVLIAFWLPQLNSYAEKTSPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEVALLLPLPWATQTTNLKT-MLIMALTLISLLAISLAYEWTQKGLEWT 114          
The following BLAST results are available for this feature:
BLAST of CK934580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_PERGO2.259e-1129.63NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]
NU3M_ONYLE2.259e-1131.19NADH-ubiquinone oxidoreductase chain 3 OS=Onychomy... [more]
NU3M_NEOFL2.259e-1132.11NADH-ubiquinone oxidoreductase chain 3 OS=Neotoma ... [more]
NU3M_LEMCA2.259e-1135.19NADH-ubiquinone oxidoreductase chain 3 OS=Lemur ca... [more]
NU3M_FELCA2.259e-1133.94NADH-ubiquinone oxidoreductase chain 3 OS=Felis ca... [more]
NU3M_AVACL2.259e-1135.19NADH-ubiquinone oxidoreductase chain 3 OS=Avahi cl... [more]
NU3M_SIGOC2.951e-1131.19NADH-ubiquinone oxidoreductase chain 3 OS=Sigmodon... [more]
NU3M_RHIPI2.951e-1132.74NADH-ubiquinone oxidoreductase chain 3 OS=Rhinolop... [more]
NU3M_HUMAN2.951e-1127.68NADH-ubiquinone oxidoreductase chain 3 OS=Homo sap... [more]
NU3M_HIPAM2.951e-1133.94NADH-ubiquinone oxidoreductase chain 3 OS=Hippopot... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934580 ID=CK934580; Name=CK934580; organism=Citrus sinensis; type=EST; length=618bp
GGGAAATAAANNNGAAGGAAGTGTAATGAAANNNGGATTCCAATCGATAA
ATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTGCGGTTCGATC
AAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACTTGACAATGAA
TTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATTCATAGGAGTT
TGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGCATTTCTAATA
ATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGC
CCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAATCGGGTATCG
AACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTATTATATGTTT
GCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTCTTTATCCATG
GGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATAGAAGCTTTCA
TTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTGGCGAAAAGGA
GCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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