CK934580

Overview
NameCK934580
Unique NameCK934580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Developing fruit peel at 38 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CK934580 vs. ExPASy Swiss-Prot
Match: NU3M_PERBO (NADH-ubiquinone oxidoreductase chain 3 OS=Peromyscus boylii GN=MT-ND3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.585e-11
Identity = 34/109 (31.19%), Postives = 60/109 (55.05%), Query Frame = 2 
Query:  245 LIISSVIPILAFLISAVLAPINKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVPVFIEAFIFMLILIVGLVYAWRKGALEWS 565
            L ++  +      I+  L  +N   EK + YE G +PM  A L F +++++ A+ F++FD+E   L   PWA+  + +   + + AFI + +L +GL Y W +  LEW+
Sbjct:    7 LSVNIALSTCLIAIAFWLPQLNLYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAIQTNNINT-MMLTAFILVSVLALGLAYEWMQKGLEWT 114
The following BLAST results are available for this feature:
BLAST of CK934580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 441
Match NameE-valueIdentityDescription
NU3M_PERBO8.585e-1131.19NADH-ubiquinone oxidoreductase chain 3 OS=Peromysc... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004229_C10 Developing fruit peel at 38 DAFB Citrus sinensis cDNA clone P38DAB10002_IVF_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK934580 ID=CK934580; Name=CK934580; organism=Citrus sinensis; type=EST; length=618bp
GGGAAATAAANNNGAAGGAAGTGTAATGAAANNNGGATTCCAATCGATAA
ATCTTAAAACGAGACATCACAACAAACAAACGAAACTTTGCGGTTCGATC
AAAATGAATTGTTGTTTTGATTAACCAATTATCGATGACTTGACAATGAA
TTCCAATTTGCATCGACAAATTTGGTCTATTTTCCACATTCATAGGAGTT
TGGCTATGTTTCTGCTTTACAAATATGATATTTTCTGGGCATTTCTAATA
ATATCAAGCGTTATTCCTATTTTGGCATTTCTAATTTCCGCAGTTTTAGC
CCCGATTAACAAAGGGCCAGAGAAACTTTCTAGTTATGAATCGGGTATCG
AACCAATGGGCGATGCTTGGTTACAATTTCGAATCCGGTATTATATGTTT
GCTCTAGTTTTTGTTGTTTTTGATGTTGAAACCGTTTTTCTTTATCCATG
GGCAATGAGTTTTGATGTATTGGGGGTACCCGTATTTATAGAAGCTTTCA
TTTTCATGCTTATCCTAATTGTTGGTTTAGTTTATGCGTGGCGAAAAGGA
GCATTAGAGTGGTCTTAGTTTCTGAATATTCAGACAATAACAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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